miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31718 3' -60.5 NC_006938.1 + 21598 0.66 0.505005
Target:  5'- cCGUGGAGcUCUcgcucuucccacaGGCUCcgcugcUGGACGGCGg -3'
miRNA:   3'- uGCGCCUC-AGG-------------CCGAGc-----ACCUGUCGC- -5'
31718 3' -60.5 NC_006938.1 + 13226 0.66 0.486333
Target:  5'- -gGCGGgcugacAGUCCuGGCUCccggaaagGGACAGUGg -3'
miRNA:   3'- ugCGCC------UCAGG-CCGAGca------CCUGUCGC- -5'
31718 3' -60.5 NC_006938.1 + 26051 0.66 0.486333
Target:  5'- -gGUGGAucccGUaCCGGCUgCGUGG-CAGCu -3'
miRNA:   3'- ugCGCCU----CA-GGCCGA-GCACCuGUCGc -5'
31718 3' -60.5 NC_006938.1 + 37709 0.66 0.467039
Target:  5'- gACGCGG--UCCGcaaggaGCUCGUGGACAa-- -3'
miRNA:   3'- -UGCGCCucAGGC------CGAGCACCUGUcgc -5'
31718 3' -60.5 NC_006938.1 + 45289 0.66 0.467039
Target:  5'- uUGCGGAGg-CGGC-CcaGGGCGGCGg -3'
miRNA:   3'- uGCGCCUCagGCCGaGcaCCUGUCGC- -5'
31718 3' -60.5 NC_006938.1 + 28936 0.67 0.429688
Target:  5'- -gGCGGAGUCaacaagaGGCUCGaggccgcuggccUGGGCGGg- -3'
miRNA:   3'- ugCGCCUCAGg------CCGAGC------------ACCUGUCgc -5'
31718 3' -60.5 NC_006938.1 + 45376 0.67 0.429688
Target:  5'- -aGCuGGuGUCCGGCcgCGcGGAgGGCGu -3'
miRNA:   3'- ugCG-CCuCAGGCCGa-GCaCCUgUCGC- -5'
31718 3' -60.5 NC_006938.1 + 50248 0.68 0.38557
Target:  5'- gGC-CGGGGUCCGGCggGUccGGcGCAGCa -3'
miRNA:   3'- -UGcGCCUCAGGCCGagCA--CC-UGUCGc -5'
31718 3' -60.5 NC_006938.1 + 12671 0.68 0.36878
Target:  5'- uCGaCGGAGUCCuguGGUgCGUGGAuCAGUGc -3'
miRNA:   3'- uGC-GCCUCAGG---CCGaGCACCU-GUCGC- -5'
31718 3' -60.5 NC_006938.1 + 26546 0.69 0.336733
Target:  5'- cGCGCGccGGUCCGGCU-GUcccugaccucGGACAGCa -3'
miRNA:   3'- -UGCGCc-UCAGGCCGAgCA----------CCUGUCGc -5'
31718 3' -60.5 NC_006938.1 + 63381 0.69 0.314061
Target:  5'- cACGCGGuGgacCUGGgUgcauaCGUGGACGGCGa -3'
miRNA:   3'- -UGCGCCuCa--GGCCgA-----GCACCUGUCGC- -5'
31718 3' -60.5 NC_006938.1 + 10208 0.74 0.163297
Target:  5'- cACGUGGAcGUUCucacagucgcccagGGCuUCGUGGACAGCGc -3'
miRNA:   3'- -UGCGCCU-CAGG--------------CCG-AGCACCUGUCGC- -5'
31718 3' -60.5 NC_006938.1 + 62709 0.77 0.102114
Target:  5'- -gGCGGcGUCUGGCgcaucuUCGUGGACGGCa -3'
miRNA:   3'- ugCGCCuCAGGCCG------AGCACCUGUCGc -5'
31718 3' -60.5 NC_006938.1 + 57202 1.08 0.000482
Target:  5'- aACGCGGAGUCCGGCUCGUGGACAGCGa -3'
miRNA:   3'- -UGCGCCUCAGGCCGAGCACCUGUCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.