miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31718 5' -56.7 NC_006938.1 + 14181 0.66 0.722969
Target:  5'- uGCCACCGgcucgccgucaUCGUCGAUCagaGGGcgcguGCCC-Ca -3'
miRNA:   3'- -CGGUGGC-----------AGUAGCUAG---CCC-----UGGGuGa -5'
31718 5' -56.7 NC_006938.1 + 22280 0.66 0.721936
Target:  5'- cGCCACCGgcccggaaGUUGAUggCGGaguugcuGACCCACa -3'
miRNA:   3'- -CGGUGGCag------UAGCUA--GCC-------CUGGGUGa -5'
31718 5' -56.7 NC_006938.1 + 11718 0.66 0.712599
Target:  5'- uCCACC-UCGUCGAU--GGugCCACg -3'
miRNA:   3'- cGGUGGcAGUAGCUAgcCCugGGUGa -5'
31718 5' -56.7 NC_006938.1 + 31794 0.66 0.702155
Target:  5'- uGCCGaaGUCGUCG-UCGuGGACCUc-- -3'
miRNA:   3'- -CGGUggCAGUAGCuAGC-CCUGGGuga -5'
31718 5' -56.7 NC_006938.1 + 45056 0.67 0.659836
Target:  5'- gGCCACCGUCGUCcGGcCGGuaGAUgCGCc -3'
miRNA:   3'- -CGGUGGCAGUAG-CUaGCC--CUGgGUGa -5'
31718 5' -56.7 NC_006938.1 + 36192 0.67 0.659836
Target:  5'- uGUCGCUGcCAUCGAcgGGGACgCCAUc -3'
miRNA:   3'- -CGGUGGCaGUAGCUagCCCUG-GGUGa -5'
31718 5' -56.7 NC_006938.1 + 18340 0.67 0.649171
Target:  5'- aCCACaugGUCAaCGGUC-GGAUCCACUg -3'
miRNA:   3'- cGGUGg--CAGUaGCUAGcCCUGGGUGA- -5'
31718 5' -56.7 NC_006938.1 + 25957 0.67 0.649171
Target:  5'- uGCCACCuGUCGcUCcagCGGGGCCguCUg -3'
miRNA:   3'- -CGGUGG-CAGU-AGcuaGCCCUGGguGA- -5'
31718 5' -56.7 NC_006938.1 + 30179 0.67 0.638491
Target:  5'- uGCCcUUGUCGUCccuGUUGGGACCgGCg -3'
miRNA:   3'- -CGGuGGCAGUAGc--UAGCCCUGGgUGa -5'
31718 5' -56.7 NC_006938.1 + 34925 0.67 0.627806
Target:  5'- aGCCACUGUCGU-GGUCGaGcACCCAg- -3'
miRNA:   3'- -CGGUGGCAGUAgCUAGC-CcUGGGUga -5'
31718 5' -56.7 NC_006938.1 + 24432 0.67 0.617124
Target:  5'- uCCACC----UCGGUCGGGACCUugGCg -3'
miRNA:   3'- cGGUGGcaguAGCUAGCCCUGGG--UGa -5'
31718 5' -56.7 NC_006938.1 + 27505 0.68 0.595807
Target:  5'- cGUCACCGU--UCGAUgccaggacugCGGGGCCaCGCa -3'
miRNA:   3'- -CGGUGGCAguAGCUA----------GCCCUGG-GUGa -5'
31718 5' -56.7 NC_006938.1 + 1346 0.68 0.574605
Target:  5'- gGCCGCCGUCGccaGAgagcUCGGGAucaacCCCAa- -3'
miRNA:   3'- -CGGUGGCAGUag-CU----AGCCCU-----GGGUga -5'
31718 5' -56.7 NC_006938.1 + 9674 0.69 0.532792
Target:  5'- cGCCAUggacaaCGUUGUCGAcCGGGccaucuACCCGCUg -3'
miRNA:   3'- -CGGUG------GCAGUAGCUaGCCC------UGGGUGA- -5'
31718 5' -56.7 NC_006938.1 + 20575 0.69 0.51229
Target:  5'- cGUCGCCagGUCGUCGAUCGucGugCCAUUg -3'
miRNA:   3'- -CGGUGG--CAGUAGCUAGCc-CugGGUGA- -5'
31718 5' -56.7 NC_006938.1 + 2974 0.7 0.472324
Target:  5'- uGCCACCGUCGaagcggaccUCG-UCGGGGucUCUACa -3'
miRNA:   3'- -CGGUGGCAGU---------AGCuAGCCCU--GGGUGa -5'
31718 5' -56.7 NC_006938.1 + 17109 0.7 0.472324
Target:  5'- gGCCGCUGUCAUCGAgugacuCCCGCg -3'
miRNA:   3'- -CGGUGGCAGUAGCUagcccuGGGUGa -5'
31718 5' -56.7 NC_006938.1 + 60046 0.7 0.443409
Target:  5'- uGCCGCCGUgguaccaggccgCGUCGAUCuGGucGugCCACUc -3'
miRNA:   3'- -CGGUGGCA------------GUAGCUAG-CC--CugGGUGA- -5'
31718 5' -56.7 NC_006938.1 + 14579 0.73 0.330787
Target:  5'- -aCACCGUCcgCGAgCGGGACCUg-- -3'
miRNA:   3'- cgGUGGCAGuaGCUaGCCCUGGGuga -5'
31718 5' -56.7 NC_006938.1 + 21513 0.77 0.176593
Target:  5'- aGgCACCGUCGUUGAUCGaGACCUGCg -3'
miRNA:   3'- -CgGUGGCAGUAGCUAGCcCUGGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.