miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31719 5' -55.5 NC_006938.1 + 332 0.66 0.749649
Target:  5'- uCUCUCCUaaUGGUUggagagcuGUUGGGCuGGCa -3'
miRNA:   3'- cGGGAGGAgcACCAG--------UAACCUGuCCG- -5'
31719 5' -55.5 NC_006938.1 + 54743 0.66 0.73938
Target:  5'- cGCCgUCCUUGaGGgCGUUGGcgACAcGGCc -3'
miRNA:   3'- -CGGgAGGAGCaCCaGUAACC--UGU-CCG- -5'
31719 5' -55.5 NC_006938.1 + 61726 0.67 0.718538
Target:  5'- uCCCUCCUCcUGGaCgg-GGAC-GGCg -3'
miRNA:   3'- cGGGAGGAGcACCaGuaaCCUGuCCG- -5'
31719 5' -55.5 NC_006938.1 + 49064 0.67 0.68668
Target:  5'- cUCCUCCUCGgagaaGGUCucc-GACAGGa -3'
miRNA:   3'- cGGGAGGAGCa----CCAGuaacCUGUCCg -5'
31719 5' -55.5 NC_006938.1 + 28139 0.67 0.68668
Target:  5'- aGCCaCUCCUCGUucaCAUUGu-CGGGCa -3'
miRNA:   3'- -CGG-GAGGAGCAccaGUAACcuGUCCG- -5'
31719 5' -55.5 NC_006938.1 + 20680 0.67 0.66517
Target:  5'- cGCCg-CCgcCGUGGUgAgaaccagGGACAGGCc -3'
miRNA:   3'- -CGGgaGGa-GCACCAgUaa-----CCUGUCCG- -5'
31719 5' -55.5 NC_006938.1 + 60306 0.69 0.557344
Target:  5'- aGCuCCUCCUCcUGGUgAUUgaaGGGC-GGCa -3'
miRNA:   3'- -CG-GGAGGAGcACCAgUAA---CCUGuCCG- -5'
31719 5' -55.5 NC_006938.1 + 56748 0.7 0.536215
Target:  5'- aGCCCUcggCCUUGUcGaCcgUGGACAGGUc -3'
miRNA:   3'- -CGGGA---GGAGCAcCaGuaACCUGUCCG- -5'
31719 5' -55.5 NC_006938.1 + 8065 0.71 0.455029
Target:  5'- gGCCC-CUcCGUGGUCGUcucuUGGcCGGGUg -3'
miRNA:   3'- -CGGGaGGaGCACCAGUA----ACCuGUCCG- -5'
31719 5' -55.5 NC_006938.1 + 27112 0.71 0.43577
Target:  5'- gGCCacgCCuUCGUGGUgGUgcacGGGCAGGUc -3'
miRNA:   3'- -CGGga-GG-AGCACCAgUAa---CCUGUCCG- -5'
31719 5' -55.5 NC_006938.1 + 60139 0.72 0.398712
Target:  5'- aGCCCUCCUCGacccaGUCccggUGGACaccguuGGGCg -3'
miRNA:   3'- -CGGGAGGAGCac---CAGua--ACCUG------UCCG- -5'
31719 5' -55.5 NC_006938.1 + 40431 0.73 0.338931
Target:  5'- aCCCUCUUCcucUGGaUCccUGGACAGGCg -3'
miRNA:   3'- cGGGAGGAGc--ACC-AGuaACCUGUCCG- -5'
31719 5' -55.5 NC_006938.1 + 55242 1.14 0.000531
Target:  5'- gGCCCUCCUCGUGGUCAUUGGACAGGCa -3'
miRNA:   3'- -CGGGAGGAGCACCAGUAACCUGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.