Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31720 | 3' | -52.2 | NC_006938.1 | + | 55067 | 1.12 | 0.001489 |
Target: 5'- cAGUAGCCGAAGUCAAACGACUGGGCCu -3' miRNA: 3'- -UCAUCGGCUUCAGUUUGCUGACCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 5572 | 0.82 | 0.171237 |
Target: 5'- --gAGCCGGAGUCcAGCGACUGGaGCa -3' miRNA: 3'- ucaUCGGCUUCAGuUUGCUGACC-CGg -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 16112 | 0.77 | 0.313691 |
Target: 5'- aAGgcGCUGAGGgaGGGCGGCUGGGUCg -3' miRNA: 3'- -UCauCGGCUUCagUUUGCUGACCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 21432 | 0.76 | 0.371948 |
Target: 5'- uGUAGCCGAGcgaGAACGcCUGGGUCa -3' miRNA: 3'- uCAUCGGCUUcagUUUGCuGACCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 56059 | 0.75 | 0.399074 |
Target: 5'- gAGUGGCCGGAugccagccacucGUCGAccCGGCUcaGGGCCg -3' miRNA: 3'- -UCAUCGGCUU------------CAGUUu-GCUGA--CCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 27023 | 0.74 | 0.487529 |
Target: 5'- ---cGCCGAcGUCucGCGAC-GGGCCa -3' miRNA: 3'- ucauCGGCUuCAGuuUGCUGaCCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 46073 | 0.74 | 0.487529 |
Target: 5'- uGGUGGCCcAGG-CAGACGGCacGGCCg -3' miRNA: 3'- -UCAUCGGcUUCaGUUUGCUGacCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 51906 | 0.72 | 0.566599 |
Target: 5'- cAGUGGCgCugcagcagacgcucuGggGUCAGGCGGCggUGGGCUc -3' miRNA: 3'- -UCAUCG-G---------------CuuCAGUUUGCUG--ACCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 33076 | 0.71 | 0.628537 |
Target: 5'- gGGUGGCCG-AGUgGuAUGGCUGGcGCa -3' miRNA: 3'- -UCAUCGGCuUCAgUuUGCUGACC-CGg -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 22853 | 0.71 | 0.628537 |
Target: 5'- uGUAGauGAAGUCcgcGCGGC-GGGCCa -3' miRNA: 3'- uCAUCggCUUCAGuu-UGCUGaCCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 6002 | 0.71 | 0.639656 |
Target: 5'- uGUAGCCGAAGUgAAgucGgGAUgagGGGCg -3' miRNA: 3'- uCAUCGGCUUCAgUU---UgCUGa--CCCGg -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 28657 | 0.71 | 0.661864 |
Target: 5'- cGUGGCUGGAGcUCcgucGCGGCUGGGa- -3' miRNA: 3'- uCAUCGGCUUC-AGuu--UGCUGACCCgg -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 32868 | 0.7 | 0.70585 |
Target: 5'- cGUGGCCGGuggcauGUUugacGACGugUGGGaCCc -3' miRNA: 3'- uCAUCGGCUu-----CAGu---UUGCugACCC-GG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 26924 | 0.7 | 0.716692 |
Target: 5'- aAGUGGaCCGgcG-CGGcccgUGACUGGGCCu -3' miRNA: 3'- -UCAUC-GGCuuCaGUUu---GCUGACCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 2874 | 0.69 | 0.727448 |
Target: 5'- ----uCCGAGGUC--GCGACUggcGGGCCg -3' miRNA: 3'- ucaucGGCUUCAGuuUGCUGA---CCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 54694 | 0.69 | 0.735984 |
Target: 5'- cGUGGUCugGGAGUCAGGCGACaacaauggauuGGCCa -3' miRNA: 3'- uCAUCGG--CUUCAGUUUGCUGac---------CCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 55910 | 0.69 | 0.738107 |
Target: 5'- uGGUGGCCGGgcAGcccuucUCGcuGAgGAcCUGGGCCg -3' miRNA: 3'- -UCAUCGGCU--UC------AGU--UUgCU-GACCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 17632 | 0.69 | 0.738107 |
Target: 5'- gAGcUGGUCGGAGcCAaccucggcuacGACcugGACUGGGCCu -3' miRNA: 3'- -UC-AUCGGCUUCaGU-----------UUG---CUGACCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 21128 | 0.69 | 0.738107 |
Target: 5'- -cUGGCUGGAGUCccGCG-C-GGGCCa -3' miRNA: 3'- ucAUCGGCUUCAGuuUGCuGaCCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 34262 | 0.69 | 0.759087 |
Target: 5'- --aGGCgGAGGUCAAcgaGCcGCaGGGCCa -3' miRNA: 3'- ucaUCGgCUUCAGUU---UGcUGaCCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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