miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31720 3' -52.2 NC_006938.1 + 2874 0.69 0.727448
Target:  5'- ----uCCGAGGUC--GCGACUggcGGGCCg -3'
miRNA:   3'- ucaucGGCUUCAGuuUGCUGA---CCCGG- -5'
31720 3' -52.2 NC_006938.1 + 5572 0.82 0.171237
Target:  5'- --gAGCCGGAGUCcAGCGACUGGaGCa -3'
miRNA:   3'- ucaUCGGCUUCAGuUUGCUGACC-CGg -5'
31720 3' -52.2 NC_006938.1 + 6002 0.71 0.639656
Target:  5'- uGUAGCCGAAGUgAAgucGgGAUgagGGGCg -3'
miRNA:   3'- uCAUCGGCUUCAgUU---UgCUGa--CCCGg -5'
31720 3' -52.2 NC_006938.1 + 6111 0.69 0.76836
Target:  5'- -cUGGCCGAGG-CAuggGGCGACUaugccggagccacGGGCUa -3'
miRNA:   3'- ucAUCGGCUUCaGU---UUGCUGA-------------CCCGG- -5'
31720 3' -52.2 NC_006938.1 + 7587 0.66 0.878574
Target:  5'- -cUGGCCGAGG----GCGuCUcGGGCCg -3'
miRNA:   3'- ucAUCGGCUUCaguuUGCuGA-CCCGG- -5'
31720 3' -52.2 NC_006938.1 + 10879 0.67 0.836786
Target:  5'- -aUAGCCGAcGUCccacuccccACGGguCUGGGCCc -3'
miRNA:   3'- ucAUCGGCUuCAGuu-------UGCU--GACCCGG- -5'
31720 3' -52.2 NC_006938.1 + 13379 0.68 0.799361
Target:  5'- gAGUAGCCGGuguucAGUCGAGCGAUguacGGa-- -3'
miRNA:   3'- -UCAUCGGCU-----UCAGUUUGCUGa---CCcgg -5'
31720 3' -52.2 NC_006938.1 + 16112 0.77 0.313691
Target:  5'- aAGgcGCUGAGGgaGGGCGGCUGGGUCg -3'
miRNA:   3'- -UCauCGGCUUCagUUUGCUGACCCGG- -5'
31720 3' -52.2 NC_006938.1 + 16262 0.67 0.845617
Target:  5'- cAGUGGCaCGAcGUgccgGAGCG-CUGGGUCg -3'
miRNA:   3'- -UCAUCG-GCUuCAg---UUUGCuGACCCGG- -5'
31720 3' -52.2 NC_006938.1 + 17050 0.68 0.827734
Target:  5'- gAGcGGCCGAGGUCAucgAGCaGCUGGcauuCCa -3'
miRNA:   3'- -UCaUCGGCUUCAGU---UUGcUGACCc---GG- -5'
31720 3' -52.2 NC_006938.1 + 17632 0.69 0.738107
Target:  5'- gAGcUGGUCGGAGcCAaccucggcuacGACcugGACUGGGCCu -3'
miRNA:   3'- -UC-AUCGGCUUCaGU-----------UUG---CUGACCCGG- -5'
31720 3' -52.2 NC_006938.1 + 21121 0.66 0.900598
Target:  5'- gGGUuccGGCCGAGGgaguggCAGGCGucGCUccGGCCg -3'
miRNA:   3'- -UCA---UCGGCUUCa-----GUUUGC--UGAc-CCGG- -5'
31720 3' -52.2 NC_006938.1 + 21128 0.69 0.738107
Target:  5'- -cUGGCUGGAGUCccGCG-C-GGGCCa -3'
miRNA:   3'- ucAUCGGCUUCAGuuUGCuGaCCCGG- -5'
31720 3' -52.2 NC_006938.1 + 21432 0.76 0.371948
Target:  5'- uGUAGCCGAGcgaGAACGcCUGGGUCa -3'
miRNA:   3'- uCAUCGGCUUcagUUUGCuGACCCGG- -5'
31720 3' -52.2 NC_006938.1 + 22853 0.71 0.628537
Target:  5'- uGUAGauGAAGUCcgcGCGGC-GGGCCa -3'
miRNA:   3'- uCAUCggCUUCAGuu-UGCUGaCCCGG- -5'
31720 3' -52.2 NC_006938.1 + 23515 0.67 0.870706
Target:  5'- uAGUAGCCGAcaccggacGUCAGGCcACUuGGCa -3'
miRNA:   3'- -UCAUCGGCUu-------CAGUUUGcUGAcCCGg -5'
31720 3' -52.2 NC_006938.1 + 23671 0.68 0.809012
Target:  5'- cGU-GCCGAAG-CAGcGCGACgucGGCCa -3'
miRNA:   3'- uCAuCGGCUUCaGUU-UGCUGac-CCGG- -5'
31720 3' -52.2 NC_006938.1 + 23755 0.67 0.836786
Target:  5'- cGUc-CCGGagGGUCAGACGGa-GGGCCg -3'
miRNA:   3'- uCAucGGCU--UCAGUUUGCUgaCCCGG- -5'
31720 3' -52.2 NC_006938.1 + 24650 0.68 0.779536
Target:  5'- --cGGCaUGAAGUUcaaGAugGACcGGGCCa -3'
miRNA:   3'- ucaUCG-GCUUCAG---UUugCUGaCCCGG- -5'
31720 3' -52.2 NC_006938.1 + 26845 0.67 0.862586
Target:  5'- --cGGCaCGAAGaCAGACGACgagauccuGGCCg -3'
miRNA:   3'- ucaUCG-GCUUCaGUUUGCUGac------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.