miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31720 3' -52.2 NC_006938.1 + 38936 0.68 0.789532
Target:  5'- cGUGGCCGggGUCGuAGCGcCgGaGGUa -3'
miRNA:   3'- uCAUCGGCuuCAGU-UUGCuGaC-CCGg -5'
31720 3' -52.2 NC_006938.1 + 24650 0.68 0.779536
Target:  5'- --cGGCaUGAAGUUcaaGAugGACcGGGCCa -3'
miRNA:   3'- ucaUCG-GCUUCAG---UUugCUGaCCCGG- -5'
31720 3' -52.2 NC_006938.1 + 30843 0.69 0.769383
Target:  5'- aGGUcGCCGAGGUCucuGGgGcACUGGccGCCg -3'
miRNA:   3'- -UCAuCGGCUUCAGu--UUgC-UGACC--CGG- -5'
31720 3' -52.2 NC_006938.1 + 6111 0.69 0.76836
Target:  5'- -cUGGCCGAGG-CAuggGGCGACUaugccggagccacGGGCUa -3'
miRNA:   3'- ucAUCGGCUUCaGU---UUGCUGA-------------CCCGG- -5'
31720 3' -52.2 NC_006938.1 + 52376 0.69 0.760123
Target:  5'- gGGUcAGCCGAGGcgAGACGAUcgacgucaacccacgGGGCCa -3'
miRNA:   3'- -UCA-UCGGCUUCagUUUGCUGa--------------CCCGG- -5'
31720 3' -52.2 NC_006938.1 + 34262 0.69 0.759087
Target:  5'- --aGGCgGAGGUCAAcgaGCcGCaGGGCCa -3'
miRNA:   3'- ucaUCGgCUUCAGUU---UGcUGaCCCGG- -5'
31720 3' -52.2 NC_006938.1 + 55910 0.69 0.738107
Target:  5'- uGGUGGCCGGgcAGcccuucUCGcuGAgGAcCUGGGCCg -3'
miRNA:   3'- -UCAUCGGCU--UC------AGU--UUgCU-GACCCGG- -5'
31720 3' -52.2 NC_006938.1 + 21128 0.69 0.738107
Target:  5'- -cUGGCUGGAGUCccGCG-C-GGGCCa -3'
miRNA:   3'- ucAUCGGCUUCAGuuUGCuGaCCCGG- -5'
31720 3' -52.2 NC_006938.1 + 17632 0.69 0.738107
Target:  5'- gAGcUGGUCGGAGcCAaccucggcuacGACcugGACUGGGCCu -3'
miRNA:   3'- -UC-AUCGGCUUCaGU-----------UUG---CUGACCCGG- -5'
31720 3' -52.2 NC_006938.1 + 54694 0.69 0.735984
Target:  5'- cGUGGUCugGGAGUCAGGCGACaacaauggauuGGCCa -3'
miRNA:   3'- uCAUCGG--CUUCAGUUUGCUGac---------CCGG- -5'
31720 3' -52.2 NC_006938.1 + 2874 0.69 0.727448
Target:  5'- ----uCCGAGGUC--GCGACUggcGGGCCg -3'
miRNA:   3'- ucaucGGCUUCAGuuUGCUGA---CCCGG- -5'
31720 3' -52.2 NC_006938.1 + 26924 0.7 0.716692
Target:  5'- aAGUGGaCCGgcG-CGGcccgUGACUGGGCCu -3'
miRNA:   3'- -UCAUC-GGCuuCaGUUu---GCUGACCCGG- -5'
31720 3' -52.2 NC_006938.1 + 32868 0.7 0.70585
Target:  5'- cGUGGCCGGuggcauGUUugacGACGugUGGGaCCc -3'
miRNA:   3'- uCAUCGGCUu-----CAGu---UUGCugACCC-GG- -5'
31720 3' -52.2 NC_006938.1 + 28657 0.71 0.661864
Target:  5'- cGUGGCUGGAGcUCcgucGCGGCUGGGa- -3'
miRNA:   3'- uCAUCGGCUUC-AGuu--UGCUGACCCgg -5'
31720 3' -52.2 NC_006938.1 + 6002 0.71 0.639656
Target:  5'- uGUAGCCGAAGUgAAgucGgGAUgagGGGCg -3'
miRNA:   3'- uCAUCGGCUUCAgUU---UgCUGa--CCCGg -5'
31720 3' -52.2 NC_006938.1 + 33076 0.71 0.628537
Target:  5'- gGGUGGCCG-AGUgGuAUGGCUGGcGCa -3'
miRNA:   3'- -UCAUCGGCuUCAgUuUGCUGACC-CGg -5'
31720 3' -52.2 NC_006938.1 + 22853 0.71 0.628537
Target:  5'- uGUAGauGAAGUCcgcGCGGC-GGGCCa -3'
miRNA:   3'- uCAUCggCUUCAGuu-UGCUGaCCCGG- -5'
31720 3' -52.2 NC_006938.1 + 51906 0.72 0.566599
Target:  5'- cAGUGGCgCugcagcagacgcucuGggGUCAGGCGGCggUGGGCUc -3'
miRNA:   3'- -UCAUCG-G---------------CuuCAGUUUGCUG--ACCCGG- -5'
31720 3' -52.2 NC_006938.1 + 46073 0.74 0.487529
Target:  5'- uGGUGGCCcAGG-CAGACGGCacGGCCg -3'
miRNA:   3'- -UCAUCGGcUUCaGUUUGCUGacCCGG- -5'
31720 3' -52.2 NC_006938.1 + 27023 0.74 0.487529
Target:  5'- ---cGCCGAcGUCucGCGAC-GGGCCa -3'
miRNA:   3'- ucauCGGCUuCAGuuUGCUGaCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.