miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31720 5' -59.1 NC_006938.1 + 15414 0.75 0.168515
Target:  5'- aCCGuCUCCGUCGCCUGCcgaacgACCGUCgcGUCg -3'
miRNA:   3'- -GGCcGAGGCAGCGGGUG------UGGCAG--UAG- -5'
31720 5' -59.1 NC_006938.1 + 43145 0.67 0.547163
Target:  5'- aUCGGCUCCGUgGCUCcgacagACACgGugcgguucuUCGUCa -3'
miRNA:   3'- -GGCCGAGGCAgCGGG------UGUGgC---------AGUAG- -5'
31720 5' -59.1 NC_006938.1 + 15960 0.67 0.547163
Target:  5'- -aGGC-CCGaUCGCCgACGCgGUCGa- -3'
miRNA:   3'- ggCCGaGGC-AGCGGgUGUGgCAGUag -5'
31720 5' -59.1 NC_006938.1 + 55258 0.67 0.526795
Target:  5'- aUCGGCagUCUGUcauucaCGCCCACGCCacccggcgcaagGUCAUUc -3'
miRNA:   3'- -GGCCG--AGGCA------GCGGGUGUGG------------CAGUAG- -5'
31720 5' -59.1 NC_006938.1 + 55458 0.67 0.526795
Target:  5'- aUCGGgUCCGUCGUCggCACACUGcUCuUCc -3'
miRNA:   3'- -GGCCgAGGCAGCGG--GUGUGGC-AGuAG- -5'
31720 5' -59.1 NC_006938.1 + 41148 0.67 0.526795
Target:  5'- gCUGGCUCCuUCGCCgCGCgggACCGa-GUCa -3'
miRNA:   3'- -GGCCGAGGcAGCGG-GUG---UGGCagUAG- -5'
31720 5' -59.1 NC_006938.1 + 37866 0.7 0.369787
Target:  5'- uCUGGCUCCaGgagauccaggagaagCGCCCACACUGguggcccgCGUCu -3'
miRNA:   3'- -GGCCGAGG-Ca--------------GCGGGUGUGGCa-------GUAG- -5'
31720 5' -59.1 NC_006938.1 + 41847 0.7 0.368956
Target:  5'- aCCGGCUCUGUCggGCUgGaguuGCCGUCGcUCa -3'
miRNA:   3'- -GGCCGAGGCAG--CGGgUg---UGGCAGU-AG- -5'
31720 5' -59.1 NC_006938.1 + 55897 0.7 0.352614
Target:  5'- -gGGCUCCGgccaggUGCCCggACACCGUggccucugcuaCAUCg -3'
miRNA:   3'- ggCCGAGGCa-----GCGGG--UGUGGCA-----------GUAG- -5'
31720 5' -59.1 NC_006938.1 + 39961 0.7 0.344638
Target:  5'- aCGGCaacuuccucaccUCCGUCGCCCACGgCuUCAc- -3'
miRNA:   3'- gGCCG------------AGGCAGCGGGUGUgGcAGUag -5'
31720 5' -59.1 NC_006938.1 + 30802 0.71 0.31404
Target:  5'- -gGGCUCCGUcCGCCUcCugCGUC-UCc -3'
miRNA:   3'- ggCCGAGGCA-GCGGGuGugGCAGuAG- -5'
31720 5' -59.1 NC_006938.1 + 63364 0.72 0.259126
Target:  5'- gCGGCgagCCgGUCGCCCACGCgGUgGa- -3'
miRNA:   3'- gGCCGa--GG-CAGCGGGUGUGgCAgUag -5'
31720 5' -59.1 NC_006938.1 + 49478 0.74 0.212308
Target:  5'- gUCGGCcgCCGUCGaCgACACCGUCuUCg -3'
miRNA:   3'- -GGCCGa-GGCAGCgGgUGUGGCAGuAG- -5'
31720 5' -59.1 NC_006938.1 + 43810 0.67 0.516718
Target:  5'- cCCGGUugUCCaG-CGCCUuccGCACCG-CGUCg -3'
miRNA:   3'- -GGCCG--AGG-CaGCGGG---UGUGGCaGUAG- -5'
31720 5' -59.1 NC_006938.1 + 44742 0.67 0.526795
Target:  5'- gCCGcGCgcccUCGUCGCCCGCgACCacCAUCu -3'
miRNA:   3'- -GGC-CGa---GGCAGCGGGUG-UGGcaGUAG- -5'
31720 5' -59.1 NC_006938.1 + 57442 0.67 0.546138
Target:  5'- gUGGCUCCGgcauagUCGCCCcaugccucggccaGgGCCGUC-UCu -3'
miRNA:   3'- gGCCGAGGC------AGCGGG-------------UgUGGCAGuAG- -5'
31720 5' -59.1 NC_006938.1 + 58794 0.66 0.557441
Target:  5'- cUCGGCgaCUGaacCGCgUACACCGUCAUUc -3'
miRNA:   3'- -GGCCGa-GGCa--GCGgGUGUGGCAGUAG- -5'
31720 5' -59.1 NC_006938.1 + 3401 0.66 0.561568
Target:  5'- aCCGGCUCCGgCGacaauggucgucugcCCCGCGCCcaccuGUCuagCg -3'
miRNA:   3'- -GGCCGAGGCaGC---------------GGGUGUGG-----CAGua-G- -5'
31720 5' -59.1 NC_006938.1 + 4988 0.66 0.567773
Target:  5'- cCCGGCcaUCCacgagCGCCC-CACCGaugcgCGUCc -3'
miRNA:   3'- -GGCCG--AGGca---GCGGGuGUGGCa----GUAG- -5'
31720 5' -59.1 NC_006938.1 + 55112 1.1 0.000499
Target:  5'- uCCGGCUCCGUCGCCCACACCGUCAUCu -3'
miRNA:   3'- -GGCCGAGGCAGCGGGUGUGGCAGUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.