miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31720 5' -59.1 NC_006938.1 + 39961 0.7 0.344638
Target:  5'- aCGGCaacuuccucaccUCCGUCGCCCACGgCuUCAc- -3'
miRNA:   3'- gGCCG------------AGGCAGCGGGUGUgGcAGUag -5'
31720 5' -59.1 NC_006938.1 + 57211 0.7 0.336792
Target:  5'- uCCGGCUCgUGgacagCGacgagaCCGcCACCGUCAUCg -3'
miRNA:   3'- -GGCCGAG-GCa----GCg-----GGU-GUGGCAGUAG- -5'
31720 5' -59.1 NC_006938.1 + 30802 0.71 0.31404
Target:  5'- -gGGCUCCGUcCGCCUcCugCGUC-UCc -3'
miRNA:   3'- ggCCGAGGCA-GCGGGuGugGCAGuAG- -5'
31720 5' -59.1 NC_006938.1 + 45019 0.71 0.313302
Target:  5'- cUCGGCUCCugcugggaguaGUcgagggcCGCCCAgaggcCACCGUCGUCc -3'
miRNA:   3'- -GGCCGAGG-----------CA-------GCGGGU-----GUGGCAGUAG- -5'
31720 5' -59.1 NC_006938.1 + 33689 0.71 0.29953
Target:  5'- uCUGGCUCCGcUCGgCCAUcacaGCCG-CGUCc -3'
miRNA:   3'- -GGCCGAGGC-AGCgGGUG----UGGCaGUAG- -5'
31720 5' -59.1 NC_006938.1 + 63364 0.72 0.259126
Target:  5'- gCGGCgagCCgGUCGCCCACGCgGUgGa- -3'
miRNA:   3'- gGCCGa--GG-CAGCGGGUGUGgCAgUag -5'
31720 5' -59.1 NC_006938.1 + 34599 0.72 0.259126
Target:  5'- aCCGGCUCUGUccCGCCCAgGCCa----- -3'
miRNA:   3'- -GGCCGAGGCA--GCGGGUgUGGcaguag -5'
31720 5' -59.1 NC_006938.1 + 49478 0.74 0.212308
Target:  5'- gUCGGCcgCCGUCGaCgACACCGUCuUCg -3'
miRNA:   3'- -GGCCGa-GGCAGCgGgUGUGGCAGuAG- -5'
31720 5' -59.1 NC_006938.1 + 41922 0.74 0.191745
Target:  5'- gCGGCcCaCGUCGCCCugguCACCGcCGUCc -3'
miRNA:   3'- gGCCGaG-GCAGCGGGu---GUGGCaGUAG- -5'
31720 5' -59.1 NC_006938.1 + 15414 0.75 0.168515
Target:  5'- aCCGuCUCCGUCGCCUGCcgaacgACCGUCgcGUCg -3'
miRNA:   3'- -GGCcGAGGCAGCGGGUG------UGGCAG--UAG- -5'
31720 5' -59.1 NC_006938.1 + 55112 1.1 0.000499
Target:  5'- uCCGGCUCCGUCGCCCACACCGUCAUCu -3'
miRNA:   3'- -GGCCGAGGCAGCGGGUGUGGCAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.