miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31720 5' -59.1 NC_006938.1 + 49478 0.74 0.212308
Target:  5'- gUCGGCcgCCGUCGaCgACACCGUCuUCg -3'
miRNA:   3'- -GGCCGa-GGCAGCgGgUGUGGCAGuAG- -5'
31720 5' -59.1 NC_006938.1 + 53507 0.67 0.513709
Target:  5'- aCCGGCUCgaugccagaggacaCGUUGUCC--GCCGUCAg- -3'
miRNA:   3'- -GGCCGAG--------------GCAGCGGGugUGGCAGUag -5'
31720 5' -59.1 NC_006938.1 + 55112 1.1 0.000499
Target:  5'- uCCGGCUCCGUCGCCCACACCGUCAUCu -3'
miRNA:   3'- -GGCCGAGGCAGCGGGUGUGGCAGUAG- -5'
31720 5' -59.1 NC_006938.1 + 55258 0.67 0.526795
Target:  5'- aUCGGCagUCUGUcauucaCGCCCACGCCacccggcgcaagGUCAUUc -3'
miRNA:   3'- -GGCCG--AGGCA------GCGGGUGUGG------------CAGUAG- -5'
31720 5' -59.1 NC_006938.1 + 55458 0.67 0.526795
Target:  5'- aUCGGgUCCGUCGUCggCACACUGcUCuUCc -3'
miRNA:   3'- -GGCCgAGGCAGCGG--GUGUGGC-AGuAG- -5'
31720 5' -59.1 NC_006938.1 + 55897 0.7 0.352614
Target:  5'- -gGGCUCCGgccaggUGCCCggACACCGUggccucugcuaCAUCg -3'
miRNA:   3'- ggCCGAGGCa-----GCGGG--UGUGGCA-----------GUAG- -5'
31720 5' -59.1 NC_006938.1 + 57211 0.7 0.336792
Target:  5'- uCCGGCUCgUGgacagCGacgagaCCGcCACCGUCAUCg -3'
miRNA:   3'- -GGCCGAG-GCa----GCg-----GGU-GUGGCAGUAG- -5'
31720 5' -59.1 NC_006938.1 + 57442 0.67 0.546138
Target:  5'- gUGGCUCCGgcauagUCGCCCcaugccucggccaGgGCCGUC-UCu -3'
miRNA:   3'- gGCCGAGGC------AGCGGG-------------UgUGGCAGuAG- -5'
31720 5' -59.1 NC_006938.1 + 58794 0.66 0.557441
Target:  5'- cUCGGCgaCUGaacCGCgUACACCGUCAUUc -3'
miRNA:   3'- -GGCCGa-GGCa--GCGgGUGUGGCAGUAG- -5'
31720 5' -59.1 NC_006938.1 + 60038 0.66 0.578153
Target:  5'- cCCGGCcuugccgCCGUgGUaCCAgGCCG-CGUCg -3'
miRNA:   3'- -GGCCGa------GGCAgCG-GGUgUGGCaGUAG- -5'
31720 5' -59.1 NC_006938.1 + 63364 0.72 0.259126
Target:  5'- gCGGCgagCCgGUCGCCCACGCgGUgGa- -3'
miRNA:   3'- gGCCGa--GG-CAGCGGGUGUGgCAgUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.