miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31721 3' -54.4 NC_006938.1 + 13341 0.66 0.784559
Target:  5'- gGAUGGCgGUGUcgacaaAGccAGCCgguGCCUGggCg -3'
miRNA:   3'- aCUACCGgCACA------UC--UCGG---UGGACaaG- -5'
31721 3' -54.4 NC_006938.1 + 8563 0.66 0.774505
Target:  5'- -cAUGGUCaUGgacgAGAGCCGCUcGUUCa -3'
miRNA:   3'- acUACCGGcACa---UCUCGGUGGaCAAG- -5'
31721 3' -54.4 NC_006938.1 + 6433 0.66 0.771459
Target:  5'- aGGUGGCCGaUGgcaagcacGAGCUcaucgagaccaucuACCUGUUUg -3'
miRNA:   3'- aCUACCGGC-ACau------CUCGG--------------UGGACAAG- -5'
31721 3' -54.4 NC_006938.1 + 2094 0.66 0.764302
Target:  5'- aGGUGGUCuuUGUGGAGCCGgacagggucacuCCUGUc- -3'
miRNA:   3'- aCUACCGGc-ACAUCUCGGU------------GGACAag -5'
31721 3' -54.4 NC_006938.1 + 32895 0.66 0.764302
Target:  5'- uUGAacGCgGUGUGGAacucuGCCACCUGa-- -3'
miRNA:   3'- -ACUacCGgCACAUCU-----CGGUGGACaag -5'
31721 3' -54.4 NC_006938.1 + 39253 0.67 0.732911
Target:  5'- gGAUgcGGCCGUcgagcaccucGUGGAGgCGCUUGUUg -3'
miRNA:   3'- aCUA--CCGGCA----------CAUCUCgGUGGACAAg -5'
31721 3' -54.4 NC_006938.1 + 29473 0.67 0.732911
Target:  5'- ---cGGCCGUGUAGAGCgCGa-UGUa- -3'
miRNA:   3'- acuaCCGGCACAUCUCG-GUggACAag -5'
31721 3' -54.4 NC_006938.1 + 11696 0.67 0.700596
Target:  5'- cUGGuUGGCCGUGUuGAGguucuCCACCUcgUCg -3'
miRNA:   3'- -ACU-ACCGGCACAuCUC-----GGUGGAcaAG- -5'
31721 3' -54.4 NC_006938.1 + 15698 0.67 0.690769
Target:  5'- gGGUcGGCCGUGgucgacugcaggacgGggagcGAGCCGCCUGUg- -3'
miRNA:   3'- aCUA-CCGGCACa--------------U-----CUCGGUGGACAag -5'
31721 3' -54.4 NC_006938.1 + 14933 0.68 0.667671
Target:  5'- -aGUGGCCGgagGUGGcGCCAUUUGUc- -3'
miRNA:   3'- acUACCGGCa--CAUCuCGGUGGACAag -5'
31721 3' -54.4 NC_006938.1 + 30010 0.68 0.63444
Target:  5'- aGGUGGCCGUGgcagcucauGAGCCagGCCUc--- -3'
miRNA:   3'- aCUACCGGCACau-------CUCGG--UGGAcaag -5'
31721 3' -54.4 NC_006938.1 + 17186 0.69 0.579138
Target:  5'- gUGAUGGUCGgcaugGUGG-GCCAgCUGgUCu -3'
miRNA:   3'- -ACUACCGGCa----CAUCuCGGUgGACaAG- -5'
31721 3' -54.4 NC_006938.1 + 14001 0.7 0.546418
Target:  5'- gGAUGGCC-UGUAugcuGCCACC-GUUCu -3'
miRNA:   3'- aCUACCGGcACAUcu--CGGUGGaCAAG- -5'
31721 3' -54.4 NC_006938.1 + 4203 0.78 0.194355
Target:  5'- cGAUGGUCGUGccAGAGCCACCUc--- -3'
miRNA:   3'- aCUACCGGCACa-UCUCGGUGGAcaag -5'
31721 3' -54.4 NC_006938.1 + 54959 1.11 0.000977
Target:  5'- gUGAUGGCCGUGUAGAGCCACCUGUUCg -3'
miRNA:   3'- -ACUACCGGCACAUCUCGGUGGACAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.