miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31722 3' -54.1 NC_006938.1 + 60677 0.67 0.73159
Target:  5'- aACG-GGACCucGCcacUGGUCGUCUCCUu -3'
miRNA:   3'- gUGCaCCUGG--CGu--ACUAGUAGAGGGu -5'
31722 3' -54.1 NC_006938.1 + 21654 0.66 0.80244
Target:  5'- gACGUGGGCCGCGcgcgGGUCcagCUgUCGg -3'
miRNA:   3'- gUGCACCUGGCGUa---CUAGua-GAgGGU- -5'
31722 3' -54.1 NC_006938.1 + 1188 0.66 0.821244
Target:  5'- aGCGUGG-CCuCAUGGUCAUaguguccaCUCUCAc -3'
miRNA:   3'- gUGCACCuGGcGUACUAGUA--------GAGGGU- -5'
31722 3' -54.1 NC_006938.1 + 11174 0.66 0.821244
Target:  5'- -cCGUGGGuuGaCGUcGAUCGUCUCgCCu -3'
miRNA:   3'- guGCACCUggC-GUA-CUAGUAGAG-GGu -5'
31722 3' -54.1 NC_006938.1 + 29208 0.68 0.710279
Target:  5'- aGCGUGGugCcucgguggcucgGCGUGAcCAUCUCUCc -3'
miRNA:   3'- gUGCACCugG------------CGUACUaGUAGAGGGu -5'
31722 3' -54.1 NC_006938.1 + 8231 0.69 0.633853
Target:  5'- aCGCGUGGACCGgGcgaccgacgacUGAcUCGgcCUCCCAc -3'
miRNA:   3'- -GUGCACCUGGCgU-----------ACU-AGUa-GAGGGU- -5'
31722 3' -54.1 NC_006938.1 + 8060 0.7 0.58991
Target:  5'- gGCGUGGcCCcucCGUGGUCGUCUCUUg -3'
miRNA:   3'- gUGCACCuGGc--GUACUAGUAGAGGGu -5'
31722 3' -54.1 NC_006938.1 + 37638 0.7 0.557292
Target:  5'- gCACGUGGAcucCCGCGUGGUCAUaugaCAg -3'
miRNA:   3'- -GUGCACCU---GGCGUACUAGUAgaggGU- -5'
31722 3' -54.1 NC_006938.1 + 54168 1.09 0.001613
Target:  5'- cCACGUGGACCGCAUGAUCAUCUCCCAg -3'
miRNA:   3'- -GUGCACCUGGCGUACUAGUAGAGGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.