miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31722 5' -57.2 NC_006938.1 + 24482 0.66 0.629018
Target:  5'- --gGGGCCGAagagccAGGUCUCGUacaUGCCa- -3'
miRNA:   3'- cuaCCUGGCUa-----UCCAGAGCG---GCGGcu -5'
31722 5' -57.2 NC_006938.1 + 12791 0.67 0.607589
Target:  5'- --aGGACgGAgcGGagCUCGUCGCCGc -3'
miRNA:   3'- cuaCCUGgCUauCCa-GAGCGGCGGCu -5'
31722 5' -57.2 NC_006938.1 + 40117 0.67 0.596901
Target:  5'- --cGGacagcGCCGGUcagccGGGUgUCGCgGCCGAg -3'
miRNA:   3'- cuaCC-----UGGCUA-----UCCAgAGCGgCGGCU- -5'
31722 5' -57.2 NC_006938.1 + 56767 0.67 0.596901
Target:  5'- cGUGGACaGGUcggccuuGGcCUCGCCGCCa- -3'
miRNA:   3'- cUACCUGgCUAu------CCaGAGCGGCGGcu -5'
31722 5' -57.2 NC_006938.1 + 17636 0.67 0.586242
Target:  5'- -cUGGGCCG-----UCUcCGCCGCCGAg -3'
miRNA:   3'- cuACCUGGCuauccAGA-GCGGCGGCU- -5'
31722 5' -57.2 NC_006938.1 + 30843 0.67 0.575618
Target:  5'- --aGGucGCCGA--GGUCUCuggggcacugGCCGCCGAc -3'
miRNA:   3'- cuaCC--UGGCUauCCAGAG----------CGGCGGCU- -5'
31722 5' -57.2 NC_006938.1 + 58688 0.68 0.533638
Target:  5'- --cGGAUUGAaGGGcUUCGCCGUCGGa -3'
miRNA:   3'- cuaCCUGGCUaUCCaGAGCGGCGGCU- -5'
31722 5' -57.2 NC_006938.1 + 203 0.68 0.533638
Target:  5'- cGUGGG-CGAccGG-CUCGCCGCCGc -3'
miRNA:   3'- cUACCUgGCUauCCaGAGCGGCGGCu -5'
31722 5' -57.2 NC_006938.1 + 24535 0.73 0.286274
Target:  5'- cGUGGAUCGugagacAGGUC-CGCCGCCGc -3'
miRNA:   3'- cUACCUGGCua----UCCAGaGCGGCGGCu -5'
31722 5' -57.2 NC_006938.1 + 30016 0.8 0.099766
Target:  5'- --cGGACgCGGUAucuGGUCUCGUCGCCGAc -3'
miRNA:   3'- cuaCCUG-GCUAU---CCAGAGCGGCGGCU- -5'
31722 5' -57.2 NC_006938.1 + 54209 1.08 0.000908
Target:  5'- uGAUGGACCGAUAGGUCUCGCCGCCGAa -3'
miRNA:   3'- -CUACCUGGCUAUCCAGAGCGGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.