miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31723 3' -56.4 NC_006938.1 + 31969 0.66 0.641623
Target:  5'- cUCUGGCuAUG-GCaACCGggagGCGGUCAa -3'
miRNA:   3'- cAGGCCG-UACaCG-UGGCa---CGCUAGUa -5'
31723 3' -56.4 NC_006938.1 + 23378 0.67 0.60871
Target:  5'- gGUCCGuGaCcUGUGCACCGacUGUGAUUGUg -3'
miRNA:   3'- -CAGGC-C-GuACACGUGGC--ACGCUAGUA- -5'
31723 3' -56.4 NC_006938.1 + 45065 0.67 0.565145
Target:  5'- cGUCCGGCcgGUagauGCGCCGccaGAUCGg -3'
miRNA:   3'- -CAGGCCGuaCA----CGUGGCacgCUAGUa -5'
31723 3' -56.4 NC_006938.1 + 30382 0.7 0.403471
Target:  5'- gGUCCGGgc--UGCACCGUGCgGGUCGg -3'
miRNA:   3'- -CAGGCCguacACGUGGCACG-CUAGUa -5'
31723 3' -56.4 NC_006938.1 + 53466 1.06 0.001209
Target:  5'- cGUCCGGCAUGUGCACCGUGCGAUCAUa -3'
miRNA:   3'- -CAGGCCGUACACGUGGCACGCUAGUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.