Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31723 | 5' | -56.2 | NC_006938.1 | + | 39960 | 0.68 | 0.547335 |
Target: 5'- gGGAGuacugcuugucgucGCCGaGCUCGAaGCCAgccgcGAGGACc -3' miRNA: 3'- aCUUC--------------UGGC-CGAGCUaCGGU-----CUCCUG- -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 52521 | 0.68 | 0.539906 |
Target: 5'- aUGGAGAUCGGCUUGucgcGCCAGuuGuACg -3' miRNA: 3'- -ACUUCUGGCCGAGCua--CGGUCucC-UG- -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 15787 | 0.69 | 0.529353 |
Target: 5'- uUGAAcAUUGGCUCcg-GCCGGAGGAg -3' miRNA: 3'- -ACUUcUGGCCGAGcuaCGGUCUCCUg -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 2509 | 0.69 | 0.498179 |
Target: 5'- ----uGCC-GCU-GAUGCCAGAGGACa -3' miRNA: 3'- acuucUGGcCGAgCUACGGUCUCCUG- -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 40840 | 0.7 | 0.456973 |
Target: 5'- -cGGGACCGGCcgggaccacccaaUCGcUGUUGGAGGACa -3' miRNA: 3'- acUUCUGGCCG-------------AGCuACGGUCUCCUG- -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 43459 | 0.72 | 0.332608 |
Target: 5'- aGGAGACCacgcGGCg-GAUGCCAGAcuGGAUg -3' miRNA: 3'- aCUUCUGG----CCGagCUACGGUCU--CCUG- -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 31536 | 0.73 | 0.301737 |
Target: 5'- cGAccuuGGCCGGUgacucUGGUGCCAcGAGGACg -3' miRNA: 3'- aCUu---CUGGCCGa----GCUACGGU-CUCCUG- -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 20766 | 0.68 | 0.571958 |
Target: 5'- cGAAGAcgcCCGcGC-CaAUGUCGGAGGACg -3' miRNA: 3'- aCUUCU---GGC-CGaGcUACGGUCUCCUG- -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 14176 | 0.68 | 0.582748 |
Target: 5'- uUGAAugccACCGGCUCGccGUcaucgucgauCAGAGGGCg -3' miRNA: 3'- -ACUUc---UGGCCGAGCuaCG----------GUCUCCUG- -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 52432 | 0.66 | 0.712784 |
Target: 5'- gGggGACgGGCgggUCGGUGUCGGGcGAg -3' miRNA: 3'- aCuuCUGgCCG---AGCUACGGUCUcCUg -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 11872 | 0.66 | 0.691398 |
Target: 5'- gUGggGAgCCGGUugacucgCGGaGCCcagAGAGGGCg -3' miRNA: 3'- -ACuuCU-GGCCGa------GCUaCGG---UCUCCUG- -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 22028 | 0.66 | 0.680615 |
Target: 5'- aGAAG-UUGGC-CGGggcuCCAGAGGACg -3' miRNA: 3'- aCUUCuGGCCGaGCUac--GGUCUCCUG- -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 26366 | 0.66 | 0.669787 |
Target: 5'- cUGggGACCGGUcCGuggagcauAUGCCcaugGGAGcGGCg -3' miRNA: 3'- -ACuuCUGGCCGaGC--------UACGG----UCUC-CUG- -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 19322 | 0.66 | 0.658924 |
Target: 5'- aGAGGGCCuGGCUCacacUGCCAGugaaGGCa -3' miRNA: 3'- aCUUCUGG-CCGAGcu--ACGGUCuc--CUG- -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 206 | 0.67 | 0.648037 |
Target: 5'- gGgcGACCGGCUCGccGCCGcccuucGGAa -3' miRNA: 3'- aCuuCUGGCCGAGCuaCGGUcu----CCUg -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 60931 | 0.67 | 0.59358 |
Target: 5'- gUGGAGGCCGcaCUCGAU-CCcGAGGAUc -3' miRNA: 3'- -ACUUCUGGCc-GAGCUAcGGuCUCCUG- -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 9122 | 0.67 | 0.59358 |
Target: 5'- uUGAAGuCCgGGgUCGucaggGCCGcGAGGACa -3' miRNA: 3'- -ACUUCuGG-CCgAGCua---CGGU-CUCCUG- -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 53501 | 1.1 | 0.000753 |
Target: 5'- cUGAAGACCGGCUCGAUGCCAGAGGACa -3' miRNA: 3'- -ACUUCUGGCCGAGCUACGGUCUCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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