miRNA display CGI


Results 21 - 38 of 38 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31723 5' -56.2 NC_006938.1 + 39960 0.68 0.547335
Target:  5'- gGGAGuacugcuugucgucGCCGaGCUCGAaGCCAgccgcGAGGACc -3'
miRNA:   3'- aCUUC--------------UGGC-CGAGCUaCGGU-----CUCCUG- -5'
31723 5' -56.2 NC_006938.1 + 52521 0.68 0.539906
Target:  5'- aUGGAGAUCGGCUUGucgcGCCAGuuGuACg -3'
miRNA:   3'- -ACUUCUGGCCGAGCua--CGGUCucC-UG- -5'
31723 5' -56.2 NC_006938.1 + 15787 0.69 0.529353
Target:  5'- uUGAAcAUUGGCUCcg-GCCGGAGGAg -3'
miRNA:   3'- -ACUUcUGGCCGAGcuaCGGUCUCCUg -5'
31723 5' -56.2 NC_006938.1 + 2509 0.69 0.498179
Target:  5'- ----uGCC-GCU-GAUGCCAGAGGACa -3'
miRNA:   3'- acuucUGGcCGAgCUACGGUCUCCUG- -5'
31723 5' -56.2 NC_006938.1 + 40840 0.7 0.456973
Target:  5'- -cGGGACCGGCcgggaccacccaaUCGcUGUUGGAGGACa -3'
miRNA:   3'- acUUCUGGCCG-------------AGCuACGGUCUCCUG- -5'
31723 5' -56.2 NC_006938.1 + 43459 0.72 0.332608
Target:  5'- aGGAGACCacgcGGCg-GAUGCCAGAcuGGAUg -3'
miRNA:   3'- aCUUCUGG----CCGagCUACGGUCU--CCUG- -5'
31723 5' -56.2 NC_006938.1 + 31536 0.73 0.301737
Target:  5'- cGAccuuGGCCGGUgacucUGGUGCCAcGAGGACg -3'
miRNA:   3'- aCUu---CUGGCCGa----GCUACGGU-CUCCUG- -5'
31723 5' -56.2 NC_006938.1 + 20766 0.68 0.571958
Target:  5'- cGAAGAcgcCCGcGC-CaAUGUCGGAGGACg -3'
miRNA:   3'- aCUUCU---GGC-CGaGcUACGGUCUCCUG- -5'
31723 5' -56.2 NC_006938.1 + 14176 0.68 0.582748
Target:  5'- uUGAAugccACCGGCUCGccGUcaucgucgauCAGAGGGCg -3'
miRNA:   3'- -ACUUc---UGGCCGAGCuaCG----------GUCUCCUG- -5'
31723 5' -56.2 NC_006938.1 + 52432 0.66 0.712784
Target:  5'- gGggGACgGGCgggUCGGUGUCGGGcGAg -3'
miRNA:   3'- aCuuCUGgCCG---AGCUACGGUCUcCUg -5'
31723 5' -56.2 NC_006938.1 + 11872 0.66 0.691398
Target:  5'- gUGggGAgCCGGUugacucgCGGaGCCcagAGAGGGCg -3'
miRNA:   3'- -ACuuCU-GGCCGa------GCUaCGG---UCUCCUG- -5'
31723 5' -56.2 NC_006938.1 + 22028 0.66 0.680615
Target:  5'- aGAAG-UUGGC-CGGggcuCCAGAGGACg -3'
miRNA:   3'- aCUUCuGGCCGaGCUac--GGUCUCCUG- -5'
31723 5' -56.2 NC_006938.1 + 26366 0.66 0.669787
Target:  5'- cUGggGACCGGUcCGuggagcauAUGCCcaugGGAGcGGCg -3'
miRNA:   3'- -ACuuCUGGCCGaGC--------UACGG----UCUC-CUG- -5'
31723 5' -56.2 NC_006938.1 + 19322 0.66 0.658924
Target:  5'- aGAGGGCCuGGCUCacacUGCCAGugaaGGCa -3'
miRNA:   3'- aCUUCUGG-CCGAGcu--ACGGUCuc--CUG- -5'
31723 5' -56.2 NC_006938.1 + 206 0.67 0.648037
Target:  5'- gGgcGACCGGCUCGccGCCGcccuucGGAa -3'
miRNA:   3'- aCuuCUGGCCGAGCuaCGGUcu----CCUg -5'
31723 5' -56.2 NC_006938.1 + 60931 0.67 0.59358
Target:  5'- gUGGAGGCCGcaCUCGAU-CCcGAGGAUc -3'
miRNA:   3'- -ACUUCUGGCc-GAGCUAcGGuCUCCUG- -5'
31723 5' -56.2 NC_006938.1 + 9122 0.67 0.59358
Target:  5'- uUGAAGuCCgGGgUCGucaggGCCGcGAGGACa -3'
miRNA:   3'- -ACUUCuGG-CCgAGCua---CGGU-CUCCUG- -5'
31723 5' -56.2 NC_006938.1 + 53501 1.1 0.000753
Target:  5'- cUGAAGACCGGCUCGAUGCCAGAGGACa -3'
miRNA:   3'- -ACUUCUGGCCGAGCUACGGUCUCCUG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.