miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31724 3' -58.7 NC_006938.1 + 33797 0.66 0.571638
Target:  5'- gGAUGgcugCCAUGUcguagcuGCUCCUCGGCgGUc- -3'
miRNA:   3'- -UUGCa---GGUGCA-------CGAGGAGCCGgCAcu -5'
31724 3' -58.7 NC_006938.1 + 37893 0.66 0.562158
Target:  5'- --aGUCC-CGUGuCUCgCUCGG-CGUGAc -3'
miRNA:   3'- uugCAGGuGCAC-GAG-GAGCCgGCACU- -5'
31724 3' -58.7 NC_006938.1 + 4225 0.66 0.552721
Target:  5'- -uCGUCaACGUGCUCCgccucuaccagaucaCGGCCG-GAu -3'
miRNA:   3'- uuGCAGgUGCACGAGGa--------------GCCGGCaCU- -5'
31724 3' -58.7 NC_006938.1 + 12675 0.67 0.470484
Target:  5'- aGGCGUUgagCACGa---CCUCGGCCGUGAu -3'
miRNA:   3'- -UUGCAG---GUGCacgaGGAGCCGGCACU- -5'
31724 3' -58.7 NC_006938.1 + 21328 0.68 0.451125
Target:  5'- gAACuuggCCACGguggacUGCUCCUCGGUCGUc- -3'
miRNA:   3'- -UUGca--GGUGC------ACGAGGAGCCGGCAcu -5'
31724 3' -58.7 NC_006938.1 + 39232 0.68 0.432211
Target:  5'- gGACGaucUCCACGUcCUCCaggaugCGGCCGUcGAg -3'
miRNA:   3'- -UUGC---AGGUGCAcGAGGa-----GCCGGCA-CU- -5'
31724 3' -58.7 NC_006938.1 + 25549 0.7 0.355666
Target:  5'- cGCGUCCcuugagGCGcaggauguugcccUGCUCCgugacguuccaacccUCGGCCGUGAa -3'
miRNA:   3'- uUGCAGG------UGC-------------ACGAGG---------------AGCCGGCACU- -5'
31724 3' -58.7 NC_006938.1 + 59296 0.72 0.24185
Target:  5'- -cCGUUCACGUcCUCCUggaacggcagguaucCGGCCGUGAu -3'
miRNA:   3'- uuGCAGGUGCAcGAGGA---------------GCCGGCACU- -5'
31724 3' -58.7 NC_006938.1 + 58073 0.74 0.175589
Target:  5'- cGCGUCCugGUGgUCCUCGG-CGUa- -3'
miRNA:   3'- uUGCAGGugCACgAGGAGCCgGCAcu -5'
31724 3' -58.7 NC_006938.1 + 36106 0.74 0.175589
Target:  5'- ---cUCCuCGUGCUCCUCGGCCGc-- -3'
miRNA:   3'- uugcAGGuGCACGAGGAGCCGGCacu -5'
31724 3' -58.7 NC_006938.1 + 53367 1.06 0.000892
Target:  5'- gAACGUCCACGUGCUCCUCGGCCGUGAc -3'
miRNA:   3'- -UUGCAGGUGCACGAGGAGCCGGCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.