miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31725 3' -55.9 NC_006938.1 + 17768 0.66 0.737622
Target:  5'- ---cGUGGCACggGCCUCGgCCUUGuUGc -3'
miRNA:   3'- gcuaCAUCGUG--CGGAGCgGGAGCuAC- -5'
31725 3' -55.9 NC_006938.1 + 1377 0.66 0.737622
Target:  5'- -uGUGUAGCGCGCCgUGCCgugugugaUUCGAa- -3'
miRNA:   3'- gcUACAUCGUGCGGaGCGG--------GAGCUac -5'
31725 3' -55.9 NC_006938.1 + 54585 0.66 0.737622
Target:  5'- gGAgccGUGGC-CGUCUaugaacgaGUCCUCGAUGg -3'
miRNA:   3'- gCUa--CAUCGuGCGGAg-------CGGGAGCUAC- -5'
31725 3' -55.9 NC_006938.1 + 45859 0.66 0.724085
Target:  5'- gCGAUG-AGCACGUCgcgauaCGCCUugacaagcggcaugUCGAUGc -3'
miRNA:   3'- -GCUACaUCGUGCGGa-----GCGGG--------------AGCUAC- -5'
31725 3' -55.9 NC_006938.1 + 62670 0.67 0.684819
Target:  5'- aGGUGUcagGGCcaucACGaCCcCGCCCUCGGUu -3'
miRNA:   3'- gCUACA---UCG----UGC-GGaGCGGGAGCUAc -5'
31725 3' -55.9 NC_006938.1 + 2937 0.67 0.674068
Target:  5'- aCGAUGgAGCuCGCC--GCCC-CGAUGg -3'
miRNA:   3'- -GCUACaUCGuGCGGagCGGGaGCUAC- -5'
31725 3' -55.9 NC_006938.1 + 6757 0.67 0.641628
Target:  5'- uGAUGUAGaugguuC-CCUgGCCCUCGAUc -3'
miRNA:   3'- gCUACAUCgu----GcGGAgCGGGAGCUAc -5'
31725 3' -55.9 NC_006938.1 + 46036 0.68 0.619942
Target:  5'- cCGGgagGUAGUGCuucgGCC-CGCCgUCGAUGg -3'
miRNA:   3'- -GCUa--CAUCGUG----CGGaGCGGgAGCUAC- -5'
31725 3' -55.9 NC_006938.1 + 813 0.68 0.60911
Target:  5'- cCGGUGUGGC-CGCCUCcguGCCCg----- -3'
miRNA:   3'- -GCUACAUCGuGCGGAG---CGGGagcuac -5'
31725 3' -55.9 NC_006938.1 + 59849 0.69 0.566061
Target:  5'- gGAUGcAGgAgGCCUCGUCCagGAUGa -3'
miRNA:   3'- gCUACaUCgUgCGGAGCGGGagCUAC- -5'
31725 3' -55.9 NC_006938.1 + 36399 0.69 0.544816
Target:  5'- uCGAcGUGGCGCGCCaUCGUCU--GAUGg -3'
miRNA:   3'- -GCUaCAUCGUGCGG-AGCGGGagCUAC- -5'
31725 3' -55.9 NC_006938.1 + 7663 0.69 0.544816
Target:  5'- aCGGUGUccgGGCACcuggccggaGcCCUCGCucgCCUCGAUGa -3'
miRNA:   3'- -GCUACA---UCGUG---------C-GGAGCG---GGAGCUAC- -5'
31725 3' -55.9 NC_006938.1 + 44505 0.69 0.523836
Target:  5'- ---cGUAGCcCGCCUCGUCCgccgCGAc- -3'
miRNA:   3'- gcuaCAUCGuGCGGAGCGGGa---GCUac -5'
31725 3' -55.9 NC_006938.1 + 2043 0.76 0.22065
Target:  5'- gCGGUGUAGCGCGCgaUuCCCUUGGUGa -3'
miRNA:   3'- -GCUACAUCGUGCGgaGcGGGAGCUAC- -5'
31725 3' -55.9 NC_006938.1 + 53150 1.08 0.001311
Target:  5'- uCGAUGUAGCACGCCUCGCCCUCGAUGu -3'
miRNA:   3'- -GCUACAUCGUGCGGAGCGGGAGCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.