miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31725 5' -52.3 NC_006938.1 + 41577 0.66 0.876434
Target:  5'- gGUUGUCGuucAGCGaUGGCAgCGCCGggUUg -3'
miRNA:   3'- -CAGUAGCc--UCGC-AUCGU-GUGGCuuAG- -5'
31725 5' -52.3 NC_006938.1 + 16974 0.66 0.891616
Target:  5'- cUCGUCGGcAGCuGgggAGCGCgggGCCGuGUCg -3'
miRNA:   3'- cAGUAGCC-UCG-Ca--UCGUG---UGGCuUAG- -5'
31725 5' -52.3 NC_006938.1 + 25191 0.67 0.834053
Target:  5'- -cCAUCaGAGCGUuccgagcgagGGCACccgACUGGAUCa -3'
miRNA:   3'- caGUAGcCUCGCA----------UCGUG---UGGCUUAG- -5'
31725 5' -52.3 NC_006938.1 + 33303 0.67 0.824883
Target:  5'- aUCGUgUGGAcacGCGccgacaAGCGCGCCGggUCg -3'
miRNA:   3'- cAGUA-GCCU---CGCa-----UCGUGUGGCuuAG- -5'
31725 5' -52.3 NC_006938.1 + 60627 0.67 0.824883
Target:  5'- -cCAUCGGGGCGgcgAGCucCAUCGucUCu -3'
miRNA:   3'- caGUAGCCUCGCa--UCGu-GUGGCuuAG- -5'
31725 5' -52.3 NC_006938.1 + 1097 0.67 0.815504
Target:  5'- uGUCGUUGGAGuUGUc-CACGCCGAAc- -3'
miRNA:   3'- -CAGUAGCCUC-GCAucGUGUGGCUUag -5'
31725 5' -52.3 NC_006938.1 + 39496 0.67 0.834053
Target:  5'- cGUCGUCGGAagcucgguGCGUGGCuggACGCCc---- -3'
miRNA:   3'- -CAGUAGCCU--------CGCAUCG---UGUGGcuuag -5'
31725 5' -52.3 NC_006938.1 + 53111 0.69 0.712641
Target:  5'- aUCAcggCGGAGUGggcggacgcaguUGGCGCGCCGAAc- -3'
miRNA:   3'- cAGUa--GCCUCGC------------AUCGUGUGGCUUag -5'
31725 5' -52.3 NC_006938.1 + 43836 0.69 0.723493
Target:  5'- -gCGUCGGgcAGCgGUGGCugGuCCGggUCc -3'
miRNA:   3'- caGUAGCC--UCG-CAUCGugU-GGCuuAG- -5'
31725 5' -52.3 NC_006938.1 + 26954 0.7 0.668532
Target:  5'- uGUCccucCGGAGUGUGGCACugccCCGGcgCg -3'
miRNA:   3'- -CAGua--GCCUCGCAUCGUGu---GGCUuaG- -5'
31725 5' -52.3 NC_006938.1 + 35920 0.71 0.612676
Target:  5'- cGUCAUCGGAcCGUucgccAGCGCgGCCGAGa- -3'
miRNA:   3'- -CAGUAGCCUcGCA-----UCGUG-UGGCUUag -5'
31725 5' -52.3 NC_006938.1 + 38026 0.71 0.635037
Target:  5'- cUCAagGGAcGCG-AGCACGCCGAGc- -3'
miRNA:   3'- cAGUagCCU-CGCaUCGUGUGGCUUag -5'
31725 5' -52.3 NC_006938.1 + 50321 0.71 0.612676
Target:  5'- uGUCAUCuccGAGCGUGGCGCGCgcacGGUCa -3'
miRNA:   3'- -CAGUAGc--CUCGCAUCGUGUGgc--UUAG- -5'
31725 5' -52.3 NC_006938.1 + 53190 1.1 0.001918
Target:  5'- cGUCAUCGGAGCGUAGCACACCGAAUCu -3'
miRNA:   3'- -CAGUAGCCUCGCAUCGUGUGGCUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.