miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31726 5' -53.2 NC_006938.1 + 57046 0.66 0.863479
Target:  5'- uUCGAGGAGCUgaaggagaucacagCGCGCucggcauugccGUCUUcGUCGAg -3'
miRNA:   3'- gAGCUUCUUGA--------------GCGCG-----------CAGAA-CGGCU- -5'
31726 5' -53.2 NC_006938.1 + 55302 0.66 0.858558
Target:  5'- cCUCGAagcccuugaacuggcGGAuccucuuauucgccGCUCGaCGCGUCUUGuuGc -3'
miRNA:   3'- -GAGCU---------------UCU--------------UGAGC-GCGCAGAACggCu -5'
31726 5' -53.2 NC_006938.1 + 27002 0.66 0.849318
Target:  5'- aUCGAGGccuGC-CGCGCGgaacGCCGAc -3'
miRNA:   3'- gAGCUUCu--UGaGCGCGCagaaCGGCU- -5'
31726 5' -53.2 NC_006938.1 + 2131 0.67 0.831819
Target:  5'- aCUCGAu--GCUC-CGUGUCgaggGCCGGu -3'
miRNA:   3'- -GAGCUucuUGAGcGCGCAGaa--CGGCU- -5'
31726 5' -53.2 NC_006938.1 + 43883 0.67 0.822751
Target:  5'- cCUCGGAGGACagacCGUGUCggUGUCGAu -3'
miRNA:   3'- -GAGCUUCUUGagc-GCGCAGa-ACGGCU- -5'
31726 5' -53.2 NC_006938.1 + 42721 0.68 0.784577
Target:  5'- uCUCGGGccacCUCGCGCuguGUCUUGCCc- -3'
miRNA:   3'- -GAGCUUcuu-GAGCGCG---CAGAACGGcu -5'
31726 5' -53.2 NC_006938.1 + 18564 0.68 0.774611
Target:  5'- -cCGAGGAuGCUCGUGCa-CUUcGCCGAg -3'
miRNA:   3'- gaGCUUCU-UGAGCGCGcaGAA-CGGCU- -5'
31726 5' -53.2 NC_006938.1 + 1682 0.68 0.754249
Target:  5'- --gGAGGAACUCGC-CGUCggucccGCUGAc -3'
miRNA:   3'- gagCUUCUUGAGCGcGCAGaa----CGGCU- -5'
31726 5' -53.2 NC_006938.1 + 57122 0.68 0.743875
Target:  5'- uCUCGAuGAGCUCGUGC---UUGCCa- -3'
miRNA:   3'- -GAGCUuCUUGAGCGCGcagAACGGcu -5'
31726 5' -53.2 NC_006938.1 + 8186 0.7 0.6248
Target:  5'- -aUGGAGGACaUCGCaCGUCgaGCCGAc -3'
miRNA:   3'- gaGCUUCUUG-AGCGcGCAGaaCGGCU- -5'
31726 5' -53.2 NC_006938.1 + 56134 0.71 0.559257
Target:  5'- cCUCGAagucugagauguGGAACUCGUGCuuGUCauaGCCGAg -3'
miRNA:   3'- -GAGCU------------UCUUGAGCGCG--CAGaa-CGGCU- -5'
31726 5' -53.2 NC_006938.1 + 52738 1.09 0.002132
Target:  5'- uCUCGAAGAACUCGCGCGUCUUGCCGAu -3'
miRNA:   3'- -GAGCUUCUUGAGCGCGCAGAACGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.