miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31727 3' -54 NC_006938.1 + 51148 1.09 0.001925
Target:  5'- gCUCGCGAACGUUCUCCCGGAACCAGAc -3'
miRNA:   3'- -GAGCGCUUGCAAGAGGGCCUUGGUCU- -5'
31727 3' -54 NC_006938.1 + 25688 0.74 0.386577
Target:  5'- -gUGUGGGCGcUUCUCCUGGAucuccuggaGCCAGAg -3'
miRNA:   3'- gaGCGCUUGC-AAGAGGGCCU---------UGGUCU- -5'
31727 3' -54 NC_006938.1 + 44188 0.74 0.395519
Target:  5'- cCUCGCGAACcUUCUUCUGGAAgaGGAa -3'
miRNA:   3'- -GAGCGCUUGcAAGAGGGCCUUggUCU- -5'
31727 3' -54 NC_006938.1 + 41277 0.7 0.630096
Target:  5'- gCUCGUGAGCG--CUCCCGGcgacGGCCuGGc -3'
miRNA:   3'- -GAGCGCUUGCaaGAGGGCC----UUGGuCU- -5'
31727 3' -54 NC_006938.1 + 3302 0.69 0.662732
Target:  5'- cCUgGCGAGCcaUCUUCUGGGAgCAGGg -3'
miRNA:   3'- -GAgCGCUUGcaAGAGGGCCUUgGUCU- -5'
31727 3' -54 NC_006938.1 + 39304 0.68 0.726961
Target:  5'- aUCGCGAc----UUCCUGGAACCGGGu -3'
miRNA:   3'- gAGCGCUugcaaGAGGGCCUUGGUCU- -5'
31727 3' -54 NC_006938.1 + 58140 0.68 0.737406
Target:  5'- gUCgGCGAGCugUCUUCUGuGAGCCAGGa -3'
miRNA:   3'- gAG-CGCUUGcaAGAGGGC-CUUGGUCU- -5'
31727 3' -54 NC_006938.1 + 51862 0.67 0.797509
Target:  5'- gCUCGCG---GUUCUCCgGGcuguuCCAGAa -3'
miRNA:   3'- -GAGCGCuugCAAGAGGgCCuu---GGUCU- -5'
31727 3' -54 NC_006938.1 + 29254 0.67 0.786878
Target:  5'- -aCGUGAACugGUUgUCCCGGAACacucccaCGGAg -3'
miRNA:   3'- gaGCGCUUG--CAAgAGGGCCUUG-------GUCU- -5'
31727 3' -54 NC_006938.1 + 34406 0.67 0.806996
Target:  5'- aCUCGUGcGACa-UCgUgCCGGAGCCAGAc -3'
miRNA:   3'- -GAGCGC-UUGcaAG-AgGGCCUUGGUCU- -5'
31727 3' -54 NC_006938.1 + 12376 0.67 0.778037
Target:  5'- uUCaCGAACG-UCUUCCGaGAGCUGGAc -3'
miRNA:   3'- gAGcGCUUGCaAGAGGGC-CUUGGUCU- -5'
31727 3' -54 NC_006938.1 + 31855 0.66 0.834342
Target:  5'- -gCGCGGuCGagggUgUCCUGGAGCCGGu -3'
miRNA:   3'- gaGCGCUuGCa---AgAGGGCCUUGGUCu -5'
31727 3' -54 NC_006938.1 + 3405 0.66 0.834342
Target:  5'- cCUCGCGcccAACGgugUC-CaCCGGGACUGGGu -3'
miRNA:   3'- -GAGCGC---UUGCa--AGaG-GGCCUUGGUCU- -5'
31727 3' -54 NC_006938.1 + 54988 0.66 0.843053
Target:  5'- cCUgGgaGGGCGUUC-CCUGGAggcACCAGGg -3'
miRNA:   3'- -GAgCg-CUUGCAAGaGGGCCU---UGGUCU- -5'
31727 3' -54 NC_006938.1 + 28630 0.66 0.851548
Target:  5'- -gCGCcGACGUUCUUCgCGGccaugaucugGACCAGGu -3'
miRNA:   3'- gaGCGcUUGCAAGAGG-GCC----------UUGGUCU- -5'
31727 3' -54 NC_006938.1 + 53676 0.66 0.843053
Target:  5'- -gCGgGAACGcgcccUUCUCCUGG-GCCAGc -3'
miRNA:   3'- gaGCgCUUGC-----AAGAGGGCCuUGGUCu -5'
31727 3' -54 NC_006938.1 + 61864 0.66 0.816304
Target:  5'- gUCGCaGAuguACGgucgagCUCCCGGucccACCAGGc -3'
miRNA:   3'- gAGCG-CU---UGCaa----GAGGGCCu---UGGUCU- -5'
31727 3' -54 NC_006938.1 + 25945 0.66 0.825423
Target:  5'- -aCGUcaGGAgGUUCUCCCcGGAACCu-- -3'
miRNA:   3'- gaGCG--CUUgCAAGAGGG-CCUUGGucu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.