Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31728 | 3' | -55.6 | NC_006938.1 | + | 61727 | 0.7 | 0.491082 |
Target: 5'- gGGaagauGCCCGAGuCAGAGCCGGuGUAGg-- -3' miRNA: 3'- gCC-----UGGGCUU-GUUUCGGCC-CAUCguc -5' |
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31728 | 3' | -55.6 | NC_006938.1 | + | 56652 | 0.71 | 0.471001 |
Target: 5'- aCGGcCCCGGcuggggagGCAAGGCCGGGgccGCu- -3' miRNA: 3'- -GCCuGGGCU--------UGUUUCGGCCCau-CGuc -5' |
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31728 | 3' | -55.6 | NC_006938.1 | + | 55571 | 0.69 | 0.574825 |
Target: 5'- aCGGGCggGAGCuGGGCCGGGUcgccgAGCAc -3' miRNA: 3'- -GCCUGggCUUGuUUCGGCCCA-----UCGUc -5' |
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31728 | 3' | -55.6 | NC_006938.1 | + | 49920 | 0.66 | 0.746179 |
Target: 5'- aCGGACCCGAGaucgcucgaAAGGCCGcccucGCAGu -3' miRNA: 3'- -GCCUGGGCUUg--------UUUCGGCccau-CGUC- -5' |
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31728 | 3' | -55.6 | NC_006938.1 | + | 49248 | 0.95 | 0.0118 |
Target: 5'- aCGGACCCGAACAAAGCCGGGauGCAGc -3' miRNA: 3'- -GCCUGGGCUUGUUUCGGCCCauCGUC- -5' |
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31728 | 3' | -55.6 | NC_006938.1 | + | 48333 | 0.67 | 0.650558 |
Target: 5'- aCGG-CCUGAACcccGGCuCGGGcGGCGGu -3' miRNA: 3'- -GCCuGGGCUUGuu-UCG-GCCCaUCGUC- -5' |
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31728 | 3' | -55.6 | NC_006938.1 | + | 47328 | 0.68 | 0.59636 |
Target: 5'- uGGcCuuGAuCAGGuCCGGGUGGCAGu -3' miRNA: 3'- gCCuGggCUuGUUUcGGCCCAUCGUC- -5' |
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31728 | 3' | -55.6 | NC_006938.1 | + | 42232 | 0.66 | 0.714924 |
Target: 5'- cCGGAgUCGAugAugagaguggGAGCCGGGgAGUGGc -3' miRNA: 3'- -GCCUgGGCUugU---------UUCGGCCCaUCGUC- -5' |
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31728 | 3' | -55.6 | NC_006938.1 | + | 40112 | 0.68 | 0.628862 |
Target: 5'- -cGACgCGGACAGcgccggucAGCCGGGUGucGCGGc -3' miRNA: 3'- gcCUGgGCUUGUU--------UCGGCCCAU--CGUC- -5' |
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31728 | 3' | -55.6 | NC_006938.1 | + | 35230 | 0.68 | 0.639713 |
Target: 5'- uGGcCCCGGACuu-GCUGGucgccucuauGUAGCAGa -3' miRNA: 3'- gCCuGGGCUUGuuuCGGCC----------CAUCGUC- -5' |
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31728 | 3' | -55.6 | NC_006938.1 | + | 34205 | 0.67 | 0.650558 |
Target: 5'- gGGACaaGGACuucGAGUgGGuGUGGCAGg -3' miRNA: 3'- gCCUGggCUUGu--UUCGgCC-CAUCGUC- -5' |
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31728 | 3' | -55.6 | NC_006938.1 | + | 31616 | 0.66 | 0.766473 |
Target: 5'- gCGGACCaagaaguucaUGGAC-AAGCCGGucguggAGCAGa -3' miRNA: 3'- -GCCUGG----------GCUUGuUUCGGCCca----UCGUC- -5' |
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31728 | 3' | -55.6 | NC_006938.1 | + | 30629 | 0.67 | 0.65814 |
Target: 5'- gGGAgCaCGAACGcgcccGAGCCGucgacccuggcucaGGUGGCAGa -3' miRNA: 3'- gCCUgG-GCUUGU-----UUCGGC--------------CCAUCGUC- -5' |
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31728 | 3' | -55.6 | NC_006938.1 | + | 30299 | 0.68 | 0.628862 |
Target: 5'- gGGAaugaagaacCCCGuccgcACGAAGCCGGGUcAGCc- -3' miRNA: 3'- gCCU---------GGGCu----UGUUUCGGCCCA-UCGuc -5' |
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31728 | 3' | -55.6 | NC_006938.1 | + | 28090 | 0.67 | 0.693672 |
Target: 5'- cCGG-CCCGAcACAcggagGAGCCcgaucuGGUGGCGGa -3' miRNA: 3'- -GCCuGGGCU-UGU-----UUCGGc-----CCAUCGUC- -5' |
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31728 | 3' | -55.6 | NC_006938.1 | + | 26572 | 0.7 | 0.521916 |
Target: 5'- aGGcgaACCUGGACAAGGCCcucgucaagcuGGGacUGGCAGa -3' miRNA: 3'- gCC---UGGGCUUGUUUCGG-----------CCC--AUCGUC- -5' |
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31728 | 3' | -55.6 | NC_006938.1 | + | 25318 | 0.72 | 0.395232 |
Target: 5'- cCGGgauGCCCGAACGgucgacugguccGAGCCGGGUcuGCGc -3' miRNA: 3'- -GCC---UGGGCUUGU------------UUCGGCCCAu-CGUc -5' |
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31728 | 3' | -55.6 | NC_006938.1 | + | 21607 | 0.68 | 0.607176 |
Target: 5'- -cGugCCGAAC-GAGCCGGGUc-CAGa -3' miRNA: 3'- gcCugGGCUUGuUUCGGCCCAucGUC- -5' |
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31728 | 3' | -55.6 | NC_006938.1 | + | 19303 | 0.68 | 0.628862 |
Target: 5'- gCGGACUacgcaGGGCgGAGGCCGgaGGUGGCAc -3' miRNA: 3'- -GCCUGGg----CUUG-UUUCGGC--CCAUCGUc -5' |
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31728 | 3' | -55.6 | NC_006938.1 | + | 16754 | 0.72 | 0.386326 |
Target: 5'- aGGAUCCGGACGucGgCGGGcuGCAGg -3' miRNA: 3'- gCCUGGGCUUGUuuCgGCCCauCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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