Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31729 | 3' | -59.6 | NC_006938.1 | + | 60813 | 0.67 | 0.438019 |
Target: 5'- cCCGCCGAGuagaccccguCCAggAUGGCGGCGgAgUg -3' miRNA: 3'- uGGCGGCUC----------GGU--UACCGCCGUgUgAg -5' |
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31729 | 3' | -59.6 | NC_006938.1 | + | 58054 | 0.66 | 0.516832 |
Target: 5'- uGCUGCC-AGCgGcgGGUGGCGCGuccugguggucCUCg -3' miRNA: 3'- -UGGCGGcUCGgUuaCCGCCGUGU-----------GAG- -5' |
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31729 | 3' | -59.6 | NC_006938.1 | + | 56844 | 0.73 | 0.192821 |
Target: 5'- -aUGUCGAGcCCAAUGuGCaGCGCACUCa -3' miRNA: 3'- ugGCGGCUC-GGUUAC-CGcCGUGUGAG- -5' |
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31729 | 3' | -59.6 | NC_006938.1 | + | 55944 | 0.75 | 0.129274 |
Target: 5'- gGCCGCCuuGCCAGUGuacGCGGCGaacuuCACUCg -3' miRNA: 3'- -UGGCGGcuCGGUUAC---CGCCGU-----GUGAG- -5' |
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31729 | 3' | -59.6 | NC_006938.1 | + | 54527 | 0.68 | 0.361522 |
Target: 5'- --aGCCGAuGCCAccucccauccgcaugGUGGCGGCggccugcuuggcGCGCUCc -3' miRNA: 3'- uggCGGCU-CGGU---------------UACCGCCG------------UGUGAG- -5' |
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31729 | 3' | -59.6 | NC_006938.1 | + | 54071 | 0.66 | 0.516832 |
Target: 5'- cGCCGCaGGGaUUggUGGCGGCGaugguCUCg -3' miRNA: 3'- -UGGCGgCUC-GGuuACCGCCGUgu---GAG- -5' |
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31729 | 3' | -59.6 | NC_006938.1 | + | 52466 | 0.66 | 0.516832 |
Target: 5'- cUCGCCuccuGCCAA-GGCGGCGaugugcCGCUCc -3' miRNA: 3'- uGGCGGcu--CGGUUaCCGCCGU------GUGAG- -5' |
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31729 | 3' | -59.6 | NC_006938.1 | + | 52186 | 0.67 | 0.447503 |
Target: 5'- gGCgGUgGAGgCGGUGGUGGCAUcUUCg -3' miRNA: 3'- -UGgCGgCUCgGUUACCGCCGUGuGAG- -5' |
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31729 | 3' | -59.6 | NC_006938.1 | + | 49022 | 1.09 | 0.000376 |
Target: 5'- gACCGCCGAGCCAAUGGCGGCACACUCg -3' miRNA: 3'- -UGGCGGCUCGGUUACCGCCGUGUGAG- -5' |
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31729 | 3' | -59.6 | NC_006938.1 | + | 46965 | 0.66 | 0.466807 |
Target: 5'- uCCGCCGAccGCCGAcGaGUGGgCGCGCgUCa -3' miRNA: 3'- uGGCGGCU--CGGUUaC-CGCC-GUGUG-AG- -5' |
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31729 | 3' | -59.6 | NC_006938.1 | + | 46905 | 0.66 | 0.466807 |
Target: 5'- aGCCGCCuggGAuGCCAAcucgGGCGGUGugaaGCUCu -3' miRNA: 3'- -UGGCGG---CU-CGGUUa---CCGCCGUg---UGAG- -5' |
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31729 | 3' | -59.6 | NC_006938.1 | + | 44637 | 0.67 | 0.438019 |
Target: 5'- gACgGCCGAGCagcGUGGUGaugaaccCGCGCUCg -3' miRNA: 3'- -UGgCGGCUCGgu-UACCGCc------GUGUGAG- -5' |
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31729 | 3' | -59.6 | NC_006938.1 | + | 43468 | 0.66 | 0.466807 |
Target: 5'- cGCgGCgGAuGCCAGacUGGaugaucagcuUGGCGCACUCg -3' miRNA: 3'- -UGgCGgCU-CGGUU--ACC----------GCCGUGUGAG- -5' |
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31729 | 3' | -59.6 | NC_006938.1 | + | 41598 | 0.71 | 0.255504 |
Target: 5'- -gCGCCGGGUUGAUGGCGcacucgugaGCGCGCUg -3' miRNA: 3'- ugGCGGCUCGGUUACCGC---------CGUGUGAg -5' |
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31729 | 3' | -59.6 | NC_006938.1 | + | 41289 | 0.73 | 0.187845 |
Target: 5'- aACUuCCGGGCCGGUGGCGcCACGgUCa -3' miRNA: 3'- -UGGcGGCUCGGUUACCGCcGUGUgAG- -5' |
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31729 | 3' | -59.6 | NC_006938.1 | + | 40829 | 0.66 | 0.475633 |
Target: 5'- aGCaCGcCCGAGCCAA-GGCguuccuggagucaGGCACGacCUCg -3' miRNA: 3'- -UG-GC-GGCUCGGUUaCCG-------------CCGUGU--GAG- -5' |
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31729 | 3' | -59.6 | NC_006938.1 | + | 38039 | 0.73 | 0.173592 |
Target: 5'- aGCaCGCCGAGCgGAUGGCcaaGGC-CGCUg -3' miRNA: 3'- -UG-GCGGCUCGgUUACCG---CCGuGUGAg -5' |
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31729 | 3' | -59.6 | NC_006938.1 | + | 34354 | 0.66 | 0.496542 |
Target: 5'- -aCGCCGAGCCAccgaGGCacCACGCUg -3' miRNA: 3'- ugGCGGCUCGGUua--CCGccGUGUGAg -5' |
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31729 | 3' | -59.6 | NC_006938.1 | + | 32013 | 0.77 | 0.098296 |
Target: 5'- uGCCaCgGAGCCAGUGGUGGCugGCa- -3' miRNA: 3'- -UGGcGgCUCGGUUACCGCCGugUGag -5' |
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31729 | 3' | -59.6 | NC_006938.1 | + | 29979 | 0.81 | 0.053078 |
Target: 5'- uGuuGuuGAGCCGGUGGCGGCACGgUUg -3' miRNA: 3'- -UggCggCUCGGUUACCGCCGUGUgAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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