miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31729 5' -56.3 NC_006938.1 + 14356 0.66 0.724194
Target:  5'- cGGAcCGCgaggGCUUUggcaCUCGGAaGGAGGUCa -3'
miRNA:   3'- -CCU-GCG----UGAGGag--GAGCCU-CUUCCAG- -5'
31729 5' -56.3 NC_006938.1 + 24463 0.66 0.714801
Target:  5'- cGugGCACcgCCUCUgggacgaagacugcaCGGAGGAGGa- -3'
miRNA:   3'- cCugCGUGa-GGAGGa--------------GCCUCUUCCag -5'
31729 5' -56.3 NC_006938.1 + 36645 0.66 0.692651
Target:  5'- cGGGcCGCGCcggUCCa-CUUGGAGuGGGUCa -3'
miRNA:   3'- -CCU-GCGUG---AGGagGAGCCUCuUCCAG- -5'
31729 5' -56.3 NC_006938.1 + 19328 0.66 0.682011
Target:  5'- aGGugGCACgguUCUUCauggacgcggCGGAGGAGGg- -3'
miRNA:   3'- -CCugCGUG---AGGAGga--------GCCUCUUCCag -5'
31729 5' -56.3 NC_006938.1 + 38394 0.67 0.671326
Target:  5'- uGGAUGgACUCCUCUcCGGuGgcGGcCu -3'
miRNA:   3'- -CCUGCgUGAGGAGGaGCCuCuuCCaG- -5'
31729 5' -56.3 NC_006938.1 + 46163 0.68 0.606813
Target:  5'- --cCGCGCUCCcuUCCaggaGGGGAGGGUg -3'
miRNA:   3'- ccuGCGUGAGG--AGGag--CCUCUUCCAg -5'
31729 5' -56.3 NC_006938.1 + 28703 0.68 0.596081
Target:  5'- uGGGCGUgaccACcaCCUCCUCGGGGuuGGcCc -3'
miRNA:   3'- -CCUGCG----UGa-GGAGGAGCCUCuuCCaG- -5'
31729 5' -56.3 NC_006938.1 + 41056 0.68 0.564095
Target:  5'- gGGAgCGCACUcgCCUCCUCcGuGGccGGGUCc -3'
miRNA:   3'- -CCU-GCGUGA--GGAGGAGcCuCU--UCCAG- -5'
31729 5' -56.3 NC_006938.1 + 22750 0.69 0.532579
Target:  5'- cGGGCGUGCUucuuggcacgggCCUCCUUGGAccgcuGGAGGa- -3'
miRNA:   3'- -CCUGCGUGA------------GGAGGAGCCU-----CUUCCag -5'
31729 5' -56.3 NC_006938.1 + 40371 0.69 0.532579
Target:  5'- --cUGCACUCCUCCagggUCGGcAGGugguagacGGGUCg -3'
miRNA:   3'- ccuGCGUGAGGAGG----AGCC-UCU--------UCCAG- -5'
31729 5' -56.3 NC_006938.1 + 25691 0.69 0.501718
Target:  5'- uGGGCGCuuCUCCUggaUCUCcuGGAGccaGAGGUCa -3'
miRNA:   3'- -CCUGCGu-GAGGA---GGAG--CCUC---UUCCAG- -5'
31729 5' -56.3 NC_006938.1 + 34243 0.71 0.433078
Target:  5'- -cGCGUGCUCaUCCUCGGcgaggcGGAGGUCa -3'
miRNA:   3'- ccUGCGUGAGgAGGAGCCu-----CUUCCAG- -5'
31729 5' -56.3 NC_006938.1 + 40466 0.73 0.321527
Target:  5'- gGGACGaCACUCCUCCgaCGGAcGAccAGGg- -3'
miRNA:   3'- -CCUGC-GUGAGGAGGa-GCCU-CU--UCCag -5'
31729 5' -56.3 NC_006938.1 + 27505 0.77 0.18432
Target:  5'- cGACGUAgauCUCCUCCUCGaAGAGGGUg -3'
miRNA:   3'- cCUGCGU---GAGGAGGAGCcUCUUCCAg -5'
31729 5' -56.3 NC_006938.1 + 30819 0.79 0.144911
Target:  5'- -uGCGUcuccaGCUCCUCCU-GGAGGAGGUCg -3'
miRNA:   3'- ccUGCG-----UGAGGAGGAgCCUCUUCCAG- -5'
31729 5' -56.3 NC_006938.1 + 49056 1.11 0.000696
Target:  5'- aGGACGCACUCCUCCUCGGAGAAGGUCu -3'
miRNA:   3'- -CCUGCGUGAGGAGGAGCCUCUUCCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.