Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31730 | 3' | -55.9 | NC_006938.1 | + | 53 | 0.66 | 0.7363 |
Target: 5'- -gCGGUcCGUCCuuGAACGUGcGCCAGu -3' miRNA: 3'- ggGCCGaGCAGGucCUUGUAC-UGGUC- -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 7660 | 0.66 | 0.746529 |
Target: 5'- gCCaCGGU--GUCCGGGcACcUGGCCGGa -3' miRNA: 3'- -GG-GCCGagCAGGUCCuUGuACUGGUC- -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 8307 | 0.67 | 0.709261 |
Target: 5'- aCCGGCUCGUCUgccuguccaAUGACCAc -3' miRNA: 3'- gGGCCGAGCAGGuccuug---UACUGGUc -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 14318 | 0.66 | 0.715551 |
Target: 5'- uCCCGGCuUUGUUCGGGucCGUGAgaagCAGa -3' miRNA: 3'- -GGGCCG-AGCAGGUCCuuGUACUg---GUC- -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 15467 | 0.71 | 0.453976 |
Target: 5'- gCUGGcCUCGaCCAGGAGCGggcUGACgCGGg -3' miRNA: 3'- gGGCC-GAGCaGGUCCUUGU---ACUG-GUC- -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 19011 | 0.78 | 0.162325 |
Target: 5'- aCCGGCUCaUCCAGGggUccucugcUGACCAGa -3' miRNA: 3'- gGGCCGAGcAGGUCCuuGu------ACUGGUC- -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 24374 | 0.66 | 0.755641 |
Target: 5'- aCCCucaGCgcgUGUCCAuccuGGAGCAggcgucaUGACCAGg -3' miRNA: 3'- -GGGc--CGa--GCAGGU----CCUUGU-------ACUGGUC- -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 25387 | 0.68 | 0.608732 |
Target: 5'- cCCUGGCuUCGgagCCuGGGACGUGuCCu- -3' miRNA: 3'- -GGGCCG-AGCa--GGuCCUUGUACuGGuc -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 26350 | 0.67 | 0.705053 |
Target: 5'- uUCCGGC-CGUCCaccacuGGGGACcgGuCCGu -3' miRNA: 3'- -GGGCCGaGCAGG------UCCUUGuaCuGGUc -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 27495 | 0.67 | 0.694487 |
Target: 5'- aCCCGGUcuccgucaccguUCGaugCCAGGAcuGCggGGCCAc -3' miRNA: 3'- -GGGCCG------------AGCa--GGUCCU--UGuaCUGGUc -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 29788 | 0.76 | 0.240187 |
Target: 5'- aUCCGGCUCGgCCgAGGGGCcagcccgGACCAGa -3' miRNA: 3'- -GGGCCGAGCaGG-UCCUUGua-----CUGGUC- -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 31164 | 0.69 | 0.555449 |
Target: 5'- uCCUcGC-CGUCCGGGAACAcccacuuguUGGCCGa -3' miRNA: 3'- -GGGcCGaGCAGGUCCUUGU---------ACUGGUc -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 31876 | 0.66 | 0.756648 |
Target: 5'- gCCGGUcugcgCGUaguacgCCAGGAACuUGGCCGc -3' miRNA: 3'- gGGCCGa----GCA------GGUCCUUGuACUGGUc -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 31942 | 0.69 | 0.544937 |
Target: 5'- aCCGGCUUGUCCAuGAACuucuUGGuCCGc -3' miRNA: 3'- gGGCCGAGCAGGUcCUUGu---ACU-GGUc -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 32969 | 0.66 | 0.743471 |
Target: 5'- --gGGCUCGUCCgccccguucuccguGGGAugGUGgGCCGa -3' miRNA: 3'- gggCCGAGCAGG--------------UCCUugUAC-UGGUc -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 34913 | 0.66 | 0.766645 |
Target: 5'- cCCCGGC-CGaCCuGGuccgauCAUGGCCGc -3' miRNA: 3'- -GGGCCGaGCaGGuCCuu----GUACUGGUc -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 39585 | 0.67 | 0.662485 |
Target: 5'- aCCaGGCacCGUCCGGGAugGUGcCCu- -3' miRNA: 3'- gGG-CCGa-GCAGGUCCUugUACuGGuc -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 41797 | 0.66 | 0.7363 |
Target: 5'- gUCCGGgUUGUCCGGGucCA-GGCCc- -3' miRNA: 3'- -GGGCCgAGCAGGUCCuuGUaCUGGuc -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 41856 | 0.68 | 0.61303 |
Target: 5'- cCCCGuGCUgGUCCAGGucgucuaucucagagAGCcgGGgCAGg -3' miRNA: 3'- -GGGC-CGAgCAGGUCC---------------UUGuaCUgGUC- -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 41962 | 0.69 | 0.544937 |
Target: 5'- aCCCGGCUCGUUCGgcacGGAGCGcaucaUGGgCGa -3' miRNA: 3'- -GGGCCGAGCAGGU----CCUUGU-----ACUgGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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