miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31730 3' -55.9 NC_006938.1 + 53507 0.68 0.598004
Target:  5'- aCCGGCUCGaugCCAGaGGACAcguUGuCCGc -3'
miRNA:   3'- gGGCCGAGCa--GGUC-CUUGU---ACuGGUc -5'
31730 3' -55.9 NC_006938.1 + 59858 0.69 0.566018
Target:  5'- --aGGcCUCGUCCAGGAugaACGcGACCGu -3'
miRNA:   3'- gggCC-GAGCAGGUCCU---UGUaCUGGUc -5'
31730 3' -55.9 NC_006938.1 + 31164 0.69 0.555449
Target:  5'- uCCUcGC-CGUCCGGGAACAcccacuuguUGGCCGa -3'
miRNA:   3'- -GGGcCGaGCAGGUCCUUGU---------ACUGGUc -5'
31730 3' -55.9 NC_006938.1 + 31942 0.69 0.544937
Target:  5'- aCCGGCUUGUCCAuGAACuucuUGGuCCGc -3'
miRNA:   3'- gGGCCGAGCAGGUcCUUGu---ACU-GGUc -5'
31730 3' -55.9 NC_006938.1 + 42505 0.7 0.493482
Target:  5'- aUCCGGC-CGUUCGGGAcgauugACAUGAgCAc -3'
miRNA:   3'- -GGGCCGaGCAGGUCCU------UGUACUgGUc -5'
31730 3' -55.9 NC_006938.1 + 50689 0.68 0.639922
Target:  5'- cCCCGGCgagcgccUgGUCCAGGAu--UGGCCc- -3'
miRNA:   3'- -GGGCCG-------AgCAGGUCCUuguACUGGuc -5'
31730 3' -55.9 NC_006938.1 + 57210 0.68 0.640998
Target:  5'- gUCCGGCUCGUggaCAGcGACGaGACCGc -3'
miRNA:   3'- -GGGCCGAGCAg--GUCcUUGUaCUGGUc -5'
31730 3' -55.9 NC_006938.1 + 31876 0.66 0.756648
Target:  5'- gCCGGUcugcgCGUaguacgCCAGGAACuUGGCCGc -3'
miRNA:   3'- gGGCCGa----GCA------GGUCCUUGuACUGGUc -5'
31730 3' -55.9 NC_006938.1 + 7660 0.66 0.746529
Target:  5'- gCCaCGGU--GUCCGGGcACcUGGCCGGa -3'
miRNA:   3'- -GG-GCCGagCAGGUCCuUGuACUGGUC- -5'
31730 3' -55.9 NC_006938.1 + 41797 0.66 0.7363
Target:  5'- gUCCGGgUUGUCCGGGucCA-GGCCc- -3'
miRNA:   3'- -GGGCCgAGCAGGUCCuuGUaCUGGuc -5'
31730 3' -55.9 NC_006938.1 + 53 0.66 0.7363
Target:  5'- -gCGGUcCGUCCuuGAACGUGcGCCAGu -3'
miRNA:   3'- ggGCCGaGCAGGucCUUGUAC-UGGUC- -5'
31730 3' -55.9 NC_006938.1 + 60956 0.66 0.7363
Target:  5'- aUCUGGUacgacUCGuugcgcUCCAGGAACcgGACCu- -3'
miRNA:   3'- -GGGCCG-----AGC------AGGUCCUUGuaCUGGuc -5'
31730 3' -55.9 NC_006938.1 + 44509 0.67 0.705053
Target:  5'- gCCCGcCUCGUCCGccGcGAcCAUGGCCGc -3'
miRNA:   3'- -GGGCcGAGCAGGU--C-CUuGUACUGGUc -5'
31730 3' -55.9 NC_006938.1 + 26350 0.67 0.705053
Target:  5'- uUCCGGC-CGUCCaccacuGGGGACcgGuCCGu -3'
miRNA:   3'- -GGGCCGaGCAGG------UCCUUGuaCuGGUc -5'
31730 3' -55.9 NC_006938.1 + 55975 0.67 0.683864
Target:  5'- aCUCGGCccgagacgcccUCGgCCAGGuGCuUGGCCAGc -3'
miRNA:   3'- -GGGCCG-----------AGCaGGUCCuUGuACUGGUC- -5'
31730 3' -55.9 NC_006938.1 + 39585 0.67 0.662485
Target:  5'- aCCaGGCacCGUCCGGGAugGUGcCCu- -3'
miRNA:   3'- gGG-CCGa-GCAGGUCCUugUACuGGuc -5'
31730 3' -55.9 NC_006938.1 + 47714 1.12 0.000768
Target:  5'- aCCCGGCUCGUCCAGGAACAUGACCAGg -3'
miRNA:   3'- -GGGCCGAGCAGGUCCUUGUACUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.