miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31731 5' -59.2 NC_006938.1 + 41483 0.67 0.443514
Target:  5'- cGUCGGGGACUuuGCCcaggccgcCGcGCAGCc- -3'
miRNA:   3'- -UAGCUCCUGAggCGGa-------GCuCGUCGaa -5'
31731 5' -59.2 NC_006938.1 + 16874 0.67 0.433958
Target:  5'- -aCGAGcGcgaccuGCUCCGCucgCUUGAGCAGCUg -3'
miRNA:   3'- uaGCUC-C------UGAGGCG---GAGCUCGUCGAa -5'
31731 5' -59.2 NC_006938.1 + 27620 0.67 0.433958
Target:  5'- gAUCuGAGuGACUCCGUCUCG-GCcGCg- -3'
miRNA:   3'- -UAG-CUC-CUGAGGCGGAGCuCGuCGaa -5'
31731 5' -59.2 NC_006938.1 + 37485 0.68 0.39697
Target:  5'- -cCGGGGACUCCuCCgcgCGAcCAGCUg -3'
miRNA:   3'- uaGCUCCUGAGGcGGa--GCUcGUCGAa -5'
31731 5' -59.2 NC_006938.1 + 21063 0.68 0.379253
Target:  5'- uUCGAGGGaaCCGCCUCGuAGU-GCUg -3'
miRNA:   3'- uAGCUCCUgaGGCGGAGC-UCGuCGAa -5'
31731 5' -59.2 NC_006938.1 + 50779 0.7 0.277501
Target:  5'- -aCGAGcuccGCUCCGuCCUgGAGCAGCUc -3'
miRNA:   3'- uaGCUCc---UGAGGC-GGAgCUCGUCGAa -5'
31731 5' -59.2 NC_006938.1 + 31615 0.76 0.116912
Target:  5'- --aGAGGGgUCCGCCuucuugagcgccagcUCGAGCAGCUUg -3'
miRNA:   3'- uagCUCCUgAGGCGG---------------AGCUCGUCGAA- -5'
31731 5' -59.2 NC_006938.1 + 46548 1.04 0.000921
Target:  5'- gAUCGAGGACUCCGCCUCGAGCAGCUUg -3'
miRNA:   3'- -UAGCUCCUGAGGCGGAGCUCGUCGAA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.