Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31732 | 3' | -54.9 | NC_006938.1 | + | 124 | 0.75 | 0.321537 |
Target: 5'- uUCACCGcCuUGGCGAUCUUguGGUa- -3' miRNA: 3'- -AGUGGCaGuACCGCUAGAGguCCAgg -5' |
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31732 | 3' | -54.9 | NC_006938.1 | + | 4109 | 0.79 | 0.175906 |
Target: 5'- gUCACUGUCggugaguugagaaccGUGGCGAagUCggCCGGGUCCg -3' miRNA: 3'- -AGUGGCAG---------------UACCGCU--AGa-GGUCCAGG- -5' |
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31732 | 3' | -54.9 | NC_006938.1 | + | 5692 | 0.67 | 0.716733 |
Target: 5'- gUCACaGUCAcUGGCGGcCUCaAGGUCa -3' miRNA: 3'- -AGUGgCAGU-ACCGCUaGAGgUCCAGg -5' |
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31732 | 3' | -54.9 | NC_006938.1 | + | 7627 | 0.7 | 0.555409 |
Target: 5'- aCACUGgCAaGGCGG-C-CCAGGUCCu -3' miRNA: 3'- aGUGGCaGUaCCGCUaGaGGUCCAGG- -5' |
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31732 | 3' | -54.9 | NC_006938.1 | + | 8052 | 0.68 | 0.674068 |
Target: 5'- gUCGCCGaggCGUGGCcc-CUCCGuGGUCg -3' miRNA: 3'- -AGUGGCa--GUACCGcuaGAGGU-CCAGg -5' |
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31732 | 3' | -54.9 | NC_006938.1 | + | 8096 | 0.66 | 0.797463 |
Target: 5'- aUCAUCGagAUGGCGA-C-CCGcGUCCg -3' miRNA: 3'- -AGUGGCagUACCGCUaGaGGUcCAGG- -5' |
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31732 | 3' | -54.9 | NC_006938.1 | + | 9468 | 0.66 | 0.806911 |
Target: 5'- -uGCCGUC-UGGgcuguaucCGAaCUCCAGGUUg -3' miRNA: 3'- agUGGCAGuACC--------GCUaGAGGUCCAGg -5' |
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31732 | 3' | -54.9 | NC_006938.1 | + | 10818 | 0.68 | 0.69552 |
Target: 5'- -uGCCGuUCcgGGCauagaagaaugcGAUgacgucCUCCAGGUCCg -3' miRNA: 3'- agUGGC-AGuaCCG------------CUA------GAGGUCCAGG- -5' |
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31732 | 3' | -54.9 | NC_006938.1 | + | 12628 | 0.76 | 0.277501 |
Target: 5'- -gACgGUCGUGGCGAagUCUcGGUCCa -3' miRNA: 3'- agUGgCAGUACCGCUagAGGuCCAGG- -5' |
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31732 | 3' | -54.9 | NC_006938.1 | + | 14257 | 0.68 | 0.69552 |
Target: 5'- gCuCCGUC-UGGCGcaCUCacaAGGUCCa -3' miRNA: 3'- aGuGGCAGuACCGCuaGAGg--UCCAGG- -5' |
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31732 | 3' | -54.9 | NC_006938.1 | + | 14553 | 0.66 | 0.768154 |
Target: 5'- aCACCGagUCcagcgaggAUGGCGAUCUgUAcagcgcGGUCCa -3' miRNA: 3'- aGUGGC--AG--------UACCGCUAGAgGU------CCAGG- -5' |
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31732 | 3' | -54.9 | NC_006938.1 | + | 16601 | 0.67 | 0.723038 |
Target: 5'- cCACuCGUC--GGCGGUCggcggaguguccgUCAGGUCCc -3' miRNA: 3'- aGUG-GCAGuaCCGCUAGa------------GGUCCAGG- -5' |
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31732 | 3' | -54.9 | NC_006938.1 | + | 17317 | 0.67 | 0.758098 |
Target: 5'- aCuCCGcCGUGGCcugCUUgAGGUCCa -3' miRNA: 3'- aGuGGCaGUACCGcuaGAGgUCCAGG- -5' |
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31732 | 3' | -54.9 | NC_006938.1 | + | 17595 | 0.67 | 0.741753 |
Target: 5'- gCACCGUcCGUGGUGuUUUCCgugauggcauagaccAGGUUCu -3' miRNA: 3'- aGUGGCA-GUACCGCuAGAGG---------------UCCAGG- -5' |
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31732 | 3' | -54.9 | NC_006938.1 | + | 18668 | 0.67 | 0.747917 |
Target: 5'- -gGCgGaCAUGGCcggGAUCUCCAGGaaggaggCCa -3' miRNA: 3'- agUGgCaGUACCG---CUAGAGGUCCa------GG- -5' |
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31732 | 3' | -54.9 | NC_006938.1 | + | 20557 | 0.66 | 0.787847 |
Target: 5'- -gGCgGUCAcauaGGgGAUCgucgCCAGGUCg -3' miRNA: 3'- agUGgCAGUa---CCgCUAGa---GGUCCAGg -5' |
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31732 | 3' | -54.9 | NC_006938.1 | + | 20682 | 0.7 | 0.566061 |
Target: 5'- cCGCCGcCGUGGUGAgaaCCAGGgacaggCCg -3' miRNA: 3'- aGUGGCaGUACCGCUagaGGUCCa-----GG- -5' |
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31732 | 3' | -54.9 | NC_006938.1 | + | 22185 | 0.67 | 0.758098 |
Target: 5'- --cCCGUCGaGGCGAaccaugccgaUCacagUCAGGUCCa -3' miRNA: 3'- aguGGCAGUaCCGCU----------AGa---GGUCCAGG- -5' |
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31732 | 3' | -54.9 | NC_006938.1 | + | 24967 | 0.68 | 0.69552 |
Target: 5'- gUugCGgcUCAgacgaacuGCGAUCUCCuGGUCCg -3' miRNA: 3'- aGugGC--AGUac------CGCUAGAGGuCCAGG- -5' |
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31732 | 3' | -54.9 | NC_006938.1 | + | 27928 | 0.67 | 0.758098 |
Target: 5'- aCACC-UC--GGCGGacuUCUCCAGGccUCCg -3' miRNA: 3'- aGUGGcAGuaCCGCU---AGAGGUCC--AGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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