miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31732 3' -54.9 NC_006938.1 + 30036 0.68 0.684819
Target:  5'- gUCGCCGaCGUGGU---CUUCAGcGUCCg -3'
miRNA:   3'- -AGUGGCaGUACCGcuaGAGGUC-CAGG- -5'
31732 3' -54.9 NC_006938.1 + 8052 0.68 0.674068
Target:  5'- gUCGCCGaggCGUGGCcc-CUCCGuGGUCg -3'
miRNA:   3'- -AGUGGCa--GUACCGcuaGAGGU-CCAGg -5'
31732 3' -54.9 NC_006938.1 + 39590 0.68 0.66328
Target:  5'- gCACCGUCcgggAUGGUGccCUCCuuGGUCg -3'
miRNA:   3'- aGUGGCAG----UACCGCuaGAGGu-CCAGg -5'
31732 3' -54.9 NC_006938.1 + 41791 0.69 0.60911
Target:  5'- aUACCgGUCcgGGU--UgUCCGGGUCCa -3'
miRNA:   3'- aGUGG-CAGuaCCGcuAgAGGUCCAGG- -5'
31732 3' -54.9 NC_006938.1 + 20682 0.7 0.566061
Target:  5'- cCGCCGcCGUGGUGAgaaCCAGGgacaggCCg -3'
miRNA:   3'- aGUGGCaGUACCGCUagaGGUCCa-----GG- -5'
31732 3' -54.9 NC_006938.1 + 7627 0.7 0.555409
Target:  5'- aCACUGgCAaGGCGG-C-CCAGGUCCu -3'
miRNA:   3'- aGUGGCaGUaCCGCUaGaGGUCCAGG- -5'
31732 3' -54.9 NC_006938.1 + 48950 0.7 0.554346
Target:  5'- -gACCGUCGgcagccagccaucUGGCaGGUCUgccaUCAGGUCCc -3'
miRNA:   3'- agUGGCAGU-------------ACCG-CUAGA----GGUCCAGG- -5'
31732 3' -54.9 NC_006938.1 + 39215 0.7 0.544816
Target:  5'- cUCcCCGUCcagggacUGGaCGAUCUCCAcGUCCu -3'
miRNA:   3'- -AGuGGCAGu------ACC-GCUAGAGGUcCAGG- -5'
31732 3' -54.9 NC_006938.1 + 39308 0.72 0.433958
Target:  5'- gUCGaaGUCcauGUGGCGGUCggUCCGGGUgCCg -3'
miRNA:   3'- -AGUggCAG---UACCGCUAG--AGGUCCA-GG- -5'
31732 3' -54.9 NC_006938.1 + 124 0.75 0.321537
Target:  5'- uUCACCGcCuUGGCGAUCUUguGGUa- -3'
miRNA:   3'- -AGUGGCaGuACCGCUAGAGguCCAgg -5'
31732 3' -54.9 NC_006938.1 + 12628 0.76 0.277501
Target:  5'- -gACgGUCGUGGCGAagUCUcGGUCCa -3'
miRNA:   3'- agUGgCAGUACCGCUagAGGuCCAGG- -5'
31732 3' -54.9 NC_006938.1 + 4109 0.79 0.175906
Target:  5'- gUCACUGUCggugaguugagaaccGUGGCGAagUCggCCGGGUCCg -3'
miRNA:   3'- -AGUGGCAG---------------UACCGCU--AGa-GGUCCAGG- -5'
31732 3' -54.9 NC_006938.1 + 46397 1.12 0.000843
Target:  5'- aUCACCGUCAUGGCGAUCUCCAGGUCCu -3'
miRNA:   3'- -AGUGGCAGUACCGCUAGAGGUCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.