miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31733 5' -57.5 NC_006938.1 + 29785 0.66 0.65175
Target:  5'- cGUCGUacugcuuccAGCCGGGGUcguUGGCggaguucaugCCGuCCu -3'
miRNA:   3'- -CAGCA---------UCGGCUCCA---ACCGa---------GGCuGGu -5'
31733 5' -57.5 NC_006938.1 + 41533 0.66 0.640998
Target:  5'- cUCGUAGCCGAccUUGaucuuGCcgCCGACCAu -3'
miRNA:   3'- cAGCAUCGGCUccAAC-----CGa-GGCUGGU- -5'
31733 5' -57.5 NC_006938.1 + 7485 0.66 0.640998
Target:  5'- -aCGgcccugAGCCG-GGUcgacgaguggcUGGCaUCCGGCCAc -3'
miRNA:   3'- caGCa-----UCGGCuCCA-----------ACCG-AGGCUGGU- -5'
31733 5' -57.5 NC_006938.1 + 17461 0.66 0.639922
Target:  5'- -cCGUGGUCGAGaGggGGaugucguUUCCGGCCGu -3'
miRNA:   3'- caGCAUCGGCUC-CaaCC-------GAGGCUGGU- -5'
31733 5' -57.5 NC_006938.1 + 55884 0.68 0.51382
Target:  5'- aUCG-AG-CGAGcGagGGCUCCGGCCAg -3'
miRNA:   3'- cAGCaUCgGCUC-CaaCCGAGGCUGGU- -5'
31733 5' -57.5 NC_006938.1 + 5273 0.68 0.483453
Target:  5'- --aGUGGCCGAGG--GGCgagUUGACCAc -3'
miRNA:   3'- cagCAUCGGCUCCaaCCGa--GGCUGGU- -5'
31733 5' -57.5 NC_006938.1 + 57432 0.69 0.473522
Target:  5'- cUCGUAGCCcg---UGGCUCCGGCa- -3'
miRNA:   3'- cAGCAUCGGcuccaACCGAGGCUGgu -5'
31733 5' -57.5 NC_006938.1 + 33077 0.69 0.462718
Target:  5'- --gGUGGCCGAguGGUaUGGCUggcgcaaCCGGCCGa -3'
miRNA:   3'- cagCAUCGGCU--CCA-ACCGA-------GGCUGGU- -5'
31733 5' -57.5 NC_006938.1 + 28990 0.69 0.444368
Target:  5'- gGUCG-AGCCGGGcauucGCUCCGACCc -3'
miRNA:   3'- -CAGCaUCGGCUCcaac-CGAGGCUGGu -5'
31733 5' -57.5 NC_006938.1 + 21122 0.71 0.355071
Target:  5'- gGUUccGGCCGAGGgagUGGCaggcgucgcUCCGGCCGc -3'
miRNA:   3'- -CAGcaUCGGCUCCa--ACCG---------AGGCUGGU- -5'
31733 5' -57.5 NC_006938.1 + 15772 0.72 0.323068
Target:  5'- cUCGaAGCCGAcGacuugaacaUUGGCUCCGGCCGg -3'
miRNA:   3'- cAGCaUCGGCUcC---------AACCGAGGCUGGU- -5'
31733 5' -57.5 NC_006938.1 + 40139 0.78 0.128667
Target:  5'- uGUCGcGGCCGAGGUggacaugacagacgcUGGCUCUGGCaCAa -3'
miRNA:   3'- -CAGCaUCGGCUCCA---------------ACCGAGGCUG-GU- -5'
31733 5' -57.5 NC_006938.1 + 45925 1.08 0.000838
Target:  5'- gGUCGUAGCCGAGGUUGGCUCCGACCAg -3'
miRNA:   3'- -CAGCAUCGGCUCCAACCGAGGCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.