Results 21 - 23 of 23 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31734 | 5' | -59.9 | NC_006938.1 | + | 25765 | 0.71 | 0.258015 |
Target: 5'- gCUCCgugguggucuggGCCAcCUCCCCGa--GCGAGGCc -3' miRNA: 3'- -GAGG------------UGGUaGAGGGGCaggCGCUCCG- -5' |
|||||||
31734 | 5' | -59.9 | NC_006938.1 | + | 8093 | 0.74 | 0.167951 |
Target: 5'- -cCCAUCAUCgagauggcgaCCCgCGUCCGCGAGGa -3' miRNA: 3'- gaGGUGGUAGa---------GGG-GCAGGCGCUCCg -5' |
|||||||
31734 | 5' | -59.9 | NC_006938.1 | + | 44001 | 1.11 | 0.000339 |
Target: 5'- uCUCCACCAUCUCCCCGUCCGCGAGGCa -3' miRNA: 3'- -GAGGUGGUAGAGGGGCAGGCGCUCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home