miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31735 3' -55.5 NC_006938.1 + 53576 0.66 0.740731
Target:  5'- aGGuGGGAGuuGc-GUAUCCCGUagcgGCCGa -3'
miRNA:   3'- gCC-CCUUCggCaaCAUAGGGUA----CGGU- -5'
31735 3' -55.5 NC_006938.1 + 5719 0.66 0.727136
Target:  5'- gCGGGaGAGGCCGgUGgcuucuggggaaagCCCAgGCCAc -3'
miRNA:   3'- -GCCC-CUUCGGCaACaua-----------GGGUaCGGU- -5'
31735 3' -55.5 NC_006938.1 + 25397 0.66 0.709124
Target:  5'- aGGGG-AGCCaagUGga--CCAUGCCAc -3'
miRNA:   3'- gCCCCuUCGGca-ACauagGGUACGGU- -5'
31735 3' -55.5 NC_006938.1 + 28159 0.67 0.687663
Target:  5'- -cGGGAGGCgGUUGccgCCCcUGCCc -3'
miRNA:   3'- gcCCCUUCGgCAACauaGGGuACGGu -5'
31735 3' -55.5 NC_006938.1 + 3495 0.69 0.578846
Target:  5'- aCGGuGAGGuuGUUGg--CCCcgGCCAc -3'
miRNA:   3'- -GCCcCUUCggCAACauaGGGuaCGGU- -5'
31735 3' -55.5 NC_006938.1 + 43650 1.09 0.001023
Target:  5'- aCGGGGAAGCCGUUGUAUCCCAUGCCAa -3'
miRNA:   3'- -GCCCCUUCGGCAACAUAGGGUACGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.