miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31735 5' -56 NC_006938.1 + 45100 0.66 0.748085
Target:  5'- -aUGUCCUCGucgcGGGACGGCuGCuGCUg -3'
miRNA:   3'- caACAGGAGC----CUCUGCUGcUGcCGAg -5'
31735 5' -56 NC_006938.1 + 14526 0.66 0.748085
Target:  5'- --cGUCCUCuGGGACGAgugugcCGccauUGGCUCg -3'
miRNA:   3'- caaCAGGAGcCUCUGCU------GCu---GCCGAG- -5'
31735 5' -56 NC_006938.1 + 52381 0.66 0.737835
Target:  5'- --aGgCCUCGGcgucgaggaGGAUGGCGGCGGUg- -3'
miRNA:   3'- caaCaGGAGCC---------UCUGCUGCUGCCGag -5'
31735 5' -56 NC_006938.1 + 45915 0.66 0.727483
Target:  5'- --gGUCCugaUCGGAGccuCGGCGGCGGa-- -3'
miRNA:   3'- caaCAGG---AGCCUCu--GCUGCUGCCgag -5'
31735 5' -56 NC_006938.1 + 13463 0.66 0.71704
Target:  5'- ----cCCUCGGcGGCGACGaucGCGGCc- -3'
miRNA:   3'- caacaGGAGCCuCUGCUGC---UGCCGag -5'
31735 5' -56 NC_006938.1 + 8291 0.66 0.71704
Target:  5'- ---cUCC-CGGuGGuCGGCGAcCGGCUCg -3'
miRNA:   3'- caacAGGaGCCuCU-GCUGCU-GCCGAG- -5'
31735 5' -56 NC_006938.1 + 36444 0.66 0.71704
Target:  5'- --cGUCCUUGGAaaGACcagGGCG-CGGCUg -3'
miRNA:   3'- caaCAGGAGCCU--CUG---CUGCuGCCGAg -5'
31735 5' -56 NC_006938.1 + 62366 0.67 0.685267
Target:  5'- --cGgggCCUCGGcucaGGugGACGACGcGCa- -3'
miRNA:   3'- caaCa--GGAGCC----UCugCUGCUGC-CGag -5'
31735 5' -56 NC_006938.1 + 51559 0.67 0.685267
Target:  5'- -aUGUCCuUCGGAgcGACGuCGACGcccuggaucaGCUCc -3'
miRNA:   3'- caACAGG-AGCCU--CUGCuGCUGC----------CGAG- -5'
31735 5' -56 NC_006938.1 + 59012 0.67 0.685267
Target:  5'- ---aUCCUCGuGGcCGACGACGGUg- -3'
miRNA:   3'- caacAGGAGCcUCuGCUGCUGCCGag -5'
31735 5' -56 NC_006938.1 + 49371 0.67 0.685267
Target:  5'- --cGcCCUCuGAucGACGAUGACGGCg- -3'
miRNA:   3'- caaCaGGAGcCU--CUGCUGCUGCCGag -5'
31735 5' -56 NC_006938.1 + 32983 0.67 0.674564
Target:  5'- --cGUUCUcCGuGGGAUGgugggccgagaGCGACGGCUCu -3'
miRNA:   3'- caaCAGGA-GC-CUCUGC-----------UGCUGCCGAG- -5'
31735 5' -56 NC_006938.1 + 19077 0.67 0.674564
Target:  5'- aUUGUCUaugCGGAGGCGcuCGACGaGCg- -3'
miRNA:   3'- cAACAGGa--GCCUCUGCu-GCUGC-CGag -5'
31735 5' -56 NC_006938.1 + 31037 0.68 0.599115
Target:  5'- -cUGgCCgcgUGGAGAagGGCGACGGCUa -3'
miRNA:   3'- caACaGGa--GCCUCUg-CUGCUGCCGAg -5'
31735 5' -56 NC_006938.1 + 9664 0.68 0.577667
Target:  5'- --cG-CCUCGGAGGgGuCGACGGUg- -3'
miRNA:   3'- caaCaGGAGCCUCUgCuGCUGCCGag -5'
31735 5' -56 NC_006938.1 + 54131 0.69 0.556392
Target:  5'- -cUGUCCUCu--GugGACGGCGcGUUCa -3'
miRNA:   3'- caACAGGAGccuCugCUGCUGC-CGAG- -5'
31735 5' -56 NC_006938.1 + 40453 0.69 0.53535
Target:  5'- uUUGUCCgugUCGGGGACGAcacuccucCGACGGaCg- -3'
miRNA:   3'- cAACAGG---AGCCUCUGCU--------GCUGCC-Gag -5'
31735 5' -56 NC_006938.1 + 21408 0.69 0.53535
Target:  5'- ----cCCUCGGAGGaGGCGugGGC-Cg -3'
miRNA:   3'- caacaGGAGCCUCUgCUGCugCCGaG- -5'
31735 5' -56 NC_006938.1 + 45890 0.7 0.494172
Target:  5'- -cUGUCCUCGc---UGACGGCGGCUUc -3'
miRNA:   3'- caACAGGAGCcucuGCUGCUGCCGAG- -5'
31735 5' -56 NC_006938.1 + 32697 0.71 0.444852
Target:  5'- -aUGUgCUCGGGGuCGuCGGCGGC-Ca -3'
miRNA:   3'- caACAgGAGCCUCuGCuGCUGCCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.