miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31737 5' -58.3 NC_006938.1 + 42176 0.66 0.584324
Target:  5'- aGGGGCUugucaCC-CGGACcGGcUCGGCCa-- -3'
miRNA:   3'- -UCUCGA-----GGuGCCUGaCC-AGCCGGaac -5'
31737 5' -58.3 NC_006938.1 + 30750 0.66 0.573701
Target:  5'- -cAGCUUgGCGGGgUuGUCGGCCUg- -3'
miRNA:   3'- ucUCGAGgUGCCUgAcCAGCCGGAac -5'
31737 5' -58.3 NC_006938.1 + 57790 0.67 0.535885
Target:  5'- gAGAGCUCCgucacguucucgucgACGGccacguCUGGUggUGGCCUg- -3'
miRNA:   3'- -UCUCGAGG---------------UGCCu-----GACCA--GCCGGAac -5'
31737 5' -58.3 NC_006938.1 + 56282 0.67 0.512183
Target:  5'- gAGAGCUUCguGCGGACggcguucuucggcacGGgCGGCUUUGg -3'
miRNA:   3'- -UCUCGAGG--UGCCUGa--------------CCaGCCGGAAC- -5'
31737 5' -58.3 NC_006938.1 + 22768 0.67 0.501
Target:  5'- cGGGcCUCCuuGGaccGCUGGaggaCGGCCUUGa -3'
miRNA:   3'- uCUC-GAGGugCC---UGACCa---GCCGGAAC- -5'
31737 5' -58.3 NC_006938.1 + 41391 0.67 0.490928
Target:  5'- --cGcCUCgACGGGCUcGUCGGCCUg- -3'
miRNA:   3'- ucuC-GAGgUGCCUGAcCAGCCGGAac -5'
31737 5' -58.3 NC_006938.1 + 9964 0.68 0.480951
Target:  5'- aGGAGCUCCAggaGGAC---UCGGCCg-- -3'
miRNA:   3'- -UCUCGAGGUg--CCUGaccAGCCGGaac -5'
31737 5' -58.3 NC_006938.1 + 17752 0.68 0.432643
Target:  5'- cGGGCUgCGCGGAgaacgUGGcacgggccUCGGCCUUGu -3'
miRNA:   3'- uCUCGAgGUGCCUg----ACC--------AGCCGGAAC- -5'
31737 5' -58.3 NC_006938.1 + 11412 0.68 0.432643
Target:  5'- aGGAGCUgCUGCaGGAgCUGGUUGGCUg-- -3'
miRNA:   3'- -UCUCGA-GGUG-CCU-GACCAGCCGGaac -5'
31737 5' -58.3 NC_006938.1 + 52268 0.7 0.345168
Target:  5'- gAGGGCUCgGCGGuCUGuUCGGCUUc- -3'
miRNA:   3'- -UCUCGAGgUGCCuGACcAGCCGGAac -5'
31737 5' -58.3 NC_006938.1 + 62219 0.7 0.337149
Target:  5'- cGAGCUCuCugGcGAC-GG-CGGCCUUGc -3'
miRNA:   3'- uCUCGAG-GugC-CUGaCCaGCCGGAAC- -5'
31737 5' -58.3 NC_006938.1 + 37200 0.7 0.336355
Target:  5'- --uGCUCCACGGACcGGUccccagugguggaCGGCCg-- -3'
miRNA:   3'- ucuCGAGGUGCCUGaCCA-------------GCCGGaac -5'
31737 5' -58.3 NC_006938.1 + 56745 0.74 0.205569
Target:  5'- aAGAGCccucggccuugucgaCCGUGGACaGGUCGGCCUUGg -3'
miRNA:   3'- -UCUCGa--------------GGUGCCUGaCCAGCCGGAAC- -5'
31737 5' -58.3 NC_006938.1 + 41977 1.08 0.000733
Target:  5'- gAGAGCUCCACGGACUGGUCGGCCUUGu -3'
miRNA:   3'- -UCUCGAGGUGCCUGACCAGCCGGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.