miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31738 5' -56.3 NC_006938.1 + 23334 0.66 0.678733
Target:  5'- gGCGUucGGGGUcuccccGUCAcGcAUGUGCUCCACg -3'
miRNA:   3'- -UGCAu-CCUCA------CGGU-C-UGCACGAGGUG- -5'
31738 5' -56.3 NC_006938.1 + 61451 0.66 0.678733
Target:  5'- uGCGUgacAGGAGUGaCCcugucCG-GCUCCACa -3'
miRNA:   3'- -UGCA---UCCUCAC-GGucu--GCaCGAGGUG- -5'
31738 5' -56.3 NC_006938.1 + 50046 0.67 0.635206
Target:  5'- cGCGagAGGccuuuGUGCCcGGCGcgggugGCUCCACa -3'
miRNA:   3'- -UGCa-UCCu----CACGGuCUGCa-----CGAGGUG- -5'
31738 5' -56.3 NC_006938.1 + 4281 0.67 0.59163
Target:  5'- gACGUGaacGGAGaGCCGGugGagcGCgUCCACa -3'
miRNA:   3'- -UGCAU---CCUCaCGGUCugCa--CG-AGGUG- -5'
31738 5' -56.3 NC_006938.1 + 7092 0.68 0.580798
Target:  5'- cCGUcuGGuugaGGUGCCAGAUGUaCUCCAUg -3'
miRNA:   3'- uGCAu-CC----UCACGGUCUGCAcGAGGUG- -5'
31738 5' -56.3 NC_006938.1 + 18613 0.68 0.570008
Target:  5'- cGCGUAGGGcaGaCCGGAaGUGCUCC-Cg -3'
miRNA:   3'- -UGCAUCCUcaC-GGUCUgCACGAGGuG- -5'
31738 5' -56.3 NC_006938.1 + 22133 0.68 0.559267
Target:  5'- cCGU-GGAGUcCCAGGCGaucaguccgaGCUCCACg -3'
miRNA:   3'- uGCAuCCUCAcGGUCUGCa---------CGAGGUG- -5'
31738 5' -56.3 NC_006938.1 + 15384 0.68 0.527419
Target:  5'- cCGUGGGAuugggcuUGCCGaGCGUccGCUCCACa -3'
miRNA:   3'- uGCAUCCUc------ACGGUcUGCA--CGAGGUG- -5'
31738 5' -56.3 NC_006938.1 + 29565 0.69 0.506566
Target:  5'- cGCGaGGGccuGUGCCagucgauauggcAGAUGUGCUCCGa -3'
miRNA:   3'- -UGCaUCCu--CACGG------------UCUGCACGAGGUg -5'
31738 5' -56.3 NC_006938.1 + 33673 0.69 0.496271
Target:  5'- gGCGgAGG-GUGCUGGAUcugGCUCCGCu -3'
miRNA:   3'- -UGCaUCCuCACGGUCUGca-CGAGGUG- -5'
31738 5' -56.3 NC_006938.1 + 6020 0.71 0.386729
Target:  5'- ---gGGGAGUGCCAG-CGaggucuccacucgGCUCCGCa -3'
miRNA:   3'- ugcaUCCUCACGGUCuGCa------------CGAGGUG- -5'
31738 5' -56.3 NC_006938.1 + 572 0.72 0.323111
Target:  5'- cAUGUGGGAG-GCCGGugcCGagagGCUCCGCc -3'
miRNA:   3'- -UGCAUCCUCaCGGUCu--GCa---CGAGGUG- -5'
31738 5' -56.3 NC_006938.1 + 21130 0.76 0.204498
Target:  5'- cCGaGGGAGUGgCAGGCGUcGCUCCGg -3'
miRNA:   3'- uGCaUCCUCACgGUCUGCA-CGAGGUg -5'
31738 5' -56.3 NC_006938.1 + 40529 1.08 0.000974
Target:  5'- gACGUAGGAGUGCCAGACGUGCUCCACc -3'
miRNA:   3'- -UGCAUCCUCACGGUCUGCACGAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.