miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31739 3' -47.3 NC_006938.1 + 28777 0.66 0.990275
Target:  5'- aAGGCCCCUgu-GAUGGcaaucugguugagGGUGgcaGUCCg -3'
miRNA:   3'- -UUUGGGGAauuUUACC-------------CUACag-CAGG- -5'
31739 3' -47.3 NC_006938.1 + 31053 0.67 0.983382
Target:  5'- -uACCCCUccAGAGUGGGccaguUGgucagcUCGUCCc -3'
miRNA:   3'- uuUGGGGAa-UUUUACCCu----AC------AGCAGG- -5'
31739 3' -47.3 NC_006938.1 + 22462 0.67 0.98113
Target:  5'- gAGGCCCCgacgaucuggUGAGuucggGGGAUGUCGaggacCCg -3'
miRNA:   3'- -UUUGGGGa---------AUUUua---CCCUACAGCa----GG- -5'
31739 3' -47.3 NC_006938.1 + 36657 0.68 0.973005
Target:  5'- --gUCCaCUUGGAGUGGGucaugcccugGUUGUCCu -3'
miRNA:   3'- uuuGGG-GAAUUUUACCCua--------CAGCAGG- -5'
31739 3' -47.3 NC_006938.1 + 51218 0.69 0.949707
Target:  5'- --gUCCUgcAGGAUGGGGUccGUUGUCCa -3'
miRNA:   3'- uuuGGGGaaUUUUACCCUA--CAGCAGG- -5'
31739 3' -47.3 NC_006938.1 + 52680 0.7 0.915824
Target:  5'- cAGACCCgUggGGAGUGGGAcGUCGgcuauggcaUCCa -3'
miRNA:   3'- -UUUGGGgAa-UUUUACCCUaCAGC---------AGG- -5'
31739 3' -47.3 NC_006938.1 + 17455 0.71 0.902089
Target:  5'- uGACCgCCguggucgAGAggGGGAUGUCGuuUCCg -3'
miRNA:   3'- uUUGG-GGaa-----UUUuaCCCUACAGC--AGG- -5'
31739 3' -47.3 NC_006938.1 + 13328 0.73 0.826214
Target:  5'- cGGACCCCggccuGGAUGGcGGUGUCGacaaagCCa -3'
miRNA:   3'- -UUUGGGGaau--UUUACC-CUACAGCa-----GG- -5'
31739 3' -47.3 NC_006938.1 + 19857 0.78 0.560221
Target:  5'- aGGACCCCagcacgAAGGUGGGAgccGUCGUCg -3'
miRNA:   3'- -UUUGGGGaa----UUUUACCCUa--CAGCAGg -5'
31739 3' -47.3 NC_006938.1 + 9240 0.81 0.410493
Target:  5'- cAAACCCgUUGAGc-GGGAUGUCGUCUc -3'
miRNA:   3'- -UUUGGGgAAUUUuaCCCUACAGCAGG- -5'
31739 3' -47.3 NC_006938.1 + 40281 1.11 0.006005
Target:  5'- uAAACCCCUUAAAAUGGGAUGUCGUCCu -3'
miRNA:   3'- -UUUGGGGAAUUUUACCCUACAGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.