miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31739 5' -57.6 NC_006938.1 + 10912 0.66 0.692872
Target:  5'- cCaGUCGCUGuugcGCCGCUCGAaacccgacgagAGGGUg- -3'
miRNA:   3'- aGcCAGCGGC----UGGUGAGCU-----------UCCCAgg -5'
31739 5' -57.6 NC_006938.1 + 62690 0.66 0.692872
Target:  5'- --cGUCGCUG-CCACUCGGcAGGG-Cg -3'
miRNA:   3'- agcCAGCGGCuGGUGAGCU-UCCCaGg -5'
31739 5' -57.6 NC_006938.1 + 58179 0.66 0.692872
Target:  5'- gCGGaCGCCaACguggCGCUCGucGGGUCUc -3'
miRNA:   3'- aGCCaGCGGcUG----GUGAGCuuCCCAGG- -5'
31739 5' -57.6 NC_006938.1 + 49422 0.66 0.682446
Target:  5'- cUGGUCGagaucuucaCCGGCU-CUCGcGAGGGUCg -3'
miRNA:   3'- aGCCAGC---------GGCUGGuGAGC-UUCCCAGg -5'
31739 5' -57.6 NC_006938.1 + 37467 0.66 0.682446
Target:  5'- -aGGUCuGUCGGCUGCUUGccGGGgacUCCu -3'
miRNA:   3'- agCCAG-CGGCUGGUGAGCuuCCC---AGG- -5'
31739 5' -57.6 NC_006938.1 + 30649 0.66 0.671976
Target:  5'- cUCGGgaugaugaagCGCUgGACCACgUUGAucuucGGGUCCc -3'
miRNA:   3'- -AGCCa---------GCGG-CUGGUG-AGCUu----CCCAGG- -5'
31739 5' -57.6 NC_006938.1 + 43846 0.66 0.671976
Target:  5'- gCGGUgGCUGGuCCGggucCGgcGGGUCCu -3'
miRNA:   3'- aGCCAgCGGCU-GGUga--GCuuCCCAGG- -5'
31739 5' -57.6 NC_006938.1 + 39541 0.66 0.661472
Target:  5'- uUCGGUgGCaCGGCCaccGCUCGcacGGUCUc -3'
miRNA:   3'- -AGCCAgCG-GCUGG---UGAGCuucCCAGG- -5'
31739 5' -57.6 NC_006938.1 + 25161 0.66 0.661472
Target:  5'- -aGGUCagGCCG-CCAC-CGGagAGGaGUCCa -3'
miRNA:   3'- agCCAG--CGGCuGGUGaGCU--UCC-CAGG- -5'
31739 5' -57.6 NC_006938.1 + 8297 0.66 0.650942
Target:  5'- gUGGUCGgCGACCGgCUCGucugccuGUCCa -3'
miRNA:   3'- aGCCAGCgGCUGGU-GAGCuucc---CAGG- -5'
31739 5' -57.6 NC_006938.1 + 60074 0.67 0.640397
Target:  5'- cUGGUCGU--GCCACUCGgGAGGGa-- -3'
miRNA:   3'- aGCCAGCGgcUGGUGAGC-UUCCCagg -5'
31739 5' -57.6 NC_006938.1 + 352 0.67 0.640397
Target:  5'- aUUGcUCGCuCGACaACUCGAAcGaGGUCCg -3'
miRNA:   3'- -AGCcAGCG-GCUGgUGAGCUU-C-CCAGG- -5'
31739 5' -57.6 NC_006938.1 + 55589 0.68 0.564779
Target:  5'- -gGGUCGCCGAgCACgaggauggggacgUCGAAGgagaggaGGUCUu -3'
miRNA:   3'- agCCAGCGGCUgGUG-------------AGCUUC-------CCAGG- -5'
31739 5' -57.6 NC_006938.1 + 35897 0.68 0.535919
Target:  5'- --aGUCGCCGA--GCUCGGGaaacccacGGGUCCg -3'
miRNA:   3'- agcCAGCGGCUggUGAGCUU--------CCCAGG- -5'
31739 5' -57.6 NC_006938.1 + 30871 0.68 0.525734
Target:  5'- aUCGGcUCGCCGGu--CUCG--GGGUCCu -3'
miRNA:   3'- -AGCC-AGCGGCUgguGAGCuuCCCAGG- -5'
31739 5' -57.6 NC_006938.1 + 15152 0.68 0.52168
Target:  5'- gCGGUCGUCgcuccggagccgguGACCACgguguaCGAgcagccacgggagAGGGUCCu -3'
miRNA:   3'- aGCCAGCGG--------------CUGGUGa-----GCU-------------UCCCAGG- -5'
31739 5' -57.6 NC_006938.1 + 4428 0.69 0.515623
Target:  5'- cUGGgcaaguUUGCCGugCGCuUUGAcGGGUCCa -3'
miRNA:   3'- aGCC------AGCGGCugGUG-AGCUuCCCAGG- -5'
31739 5' -57.6 NC_006938.1 + 17240 0.69 0.505592
Target:  5'- cUCGGacgugacCGCCcuGCCACUUGGaucgaucguGGGGUCCu -3'
miRNA:   3'- -AGCCa------GCGGc-UGGUGAGCU---------UCCCAGG- -5'
31739 5' -57.6 NC_006938.1 + 27819 0.69 0.485787
Target:  5'- -aGGUCGgCGGCCG---GAAGGGUCa -3'
miRNA:   3'- agCCAGCgGCUGGUgagCUUCCCAGg -5'
31739 5' -57.6 NC_006938.1 + 43451 0.69 0.466359
Target:  5'- gCGGUCGgCGACUAUgugaUCGA-GGG-CCg -3'
miRNA:   3'- aGCCAGCgGCUGGUG----AGCUuCCCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.