Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31739 | 5' | -57.6 | NC_006938.1 | + | 30649 | 0.66 | 0.671976 |
Target: 5'- cUCGGgaugaugaagCGCUgGACCACgUUGAucuucGGGUCCc -3' miRNA: 3'- -AGCCa---------GCGG-CUGGUG-AGCUu----CCCAGG- -5' |
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31739 | 5' | -57.6 | NC_006938.1 | + | 27819 | 0.69 | 0.485787 |
Target: 5'- -aGGUCGgCGGCCG---GAAGGGUCa -3' miRNA: 3'- agCCAGCgGCUGGUgagCUUCCCAGg -5' |
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31739 | 5' | -57.6 | NC_006938.1 | + | 25161 | 0.66 | 0.661472 |
Target: 5'- -aGGUCagGCCG-CCAC-CGGagAGGaGUCCa -3' miRNA: 3'- agCCAG--CGGCuGGUGaGCU--UCC-CAGG- -5' |
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31739 | 5' | -57.6 | NC_006938.1 | + | 24027 | 0.7 | 0.419645 |
Target: 5'- gCGGUgGCCGuGCCAC-CGAacuuggcaaccuGGGcGUCCa -3' miRNA: 3'- aGCCAgCGGC-UGGUGaGCU------------UCC-CAGG- -5' |
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31739 | 5' | -57.6 | NC_006938.1 | + | 17240 | 0.69 | 0.505592 |
Target: 5'- cUCGGacgugacCGCCcuGCCACUUGGaucgaucguGGGGUCCu -3' miRNA: 3'- -AGCCa------GCGGc-UGGUGAGCU---------UCCCAGG- -5' |
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31739 | 5' | -57.6 | NC_006938.1 | + | 15152 | 0.68 | 0.52168 |
Target: 5'- gCGGUCGUCgcuccggagccgguGACCACgguguaCGAgcagccacgggagAGGGUCCu -3' miRNA: 3'- aGCCAGCGG--------------CUGGUGa-----GCU-------------UCCCAGG- -5' |
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31739 | 5' | -57.6 | NC_006938.1 | + | 10912 | 0.66 | 0.692872 |
Target: 5'- cCaGUCGCUGuugcGCCGCUCGAaacccgacgagAGGGUg- -3' miRNA: 3'- aGcCAGCGGC----UGGUGAGCU-----------UCCCAgg -5' |
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31739 | 5' | -57.6 | NC_006938.1 | + | 8297 | 0.66 | 0.650942 |
Target: 5'- gUGGUCGgCGACCGgCUCGucugccuGUCCa -3' miRNA: 3'- aGCCAGCgGCUGGU-GAGCuucc---CAGG- -5' |
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31739 | 5' | -57.6 | NC_006938.1 | + | 4428 | 0.69 | 0.515623 |
Target: 5'- cUGGgcaaguUUGCCGugCGCuUUGAcGGGUCCa -3' miRNA: 3'- aGCC------AGCGGCugGUG-AGCUuCCCAGG- -5' |
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31739 | 5' | -57.6 | NC_006938.1 | + | 352 | 0.67 | 0.640397 |
Target: 5'- aUUGcUCGCuCGACaACUCGAAcGaGGUCCg -3' miRNA: 3'- -AGCcAGCG-GCUGgUGAGCUU-C-CCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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