Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31739 | 5' | -57.6 | NC_006938.1 | + | 27819 | 0.69 | 0.485787 |
Target: 5'- -aGGUCGgCGGCCG---GAAGGGUCa -3' miRNA: 3'- agCCAGCgGCUGGUgagCUUCCCAGg -5' |
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31739 | 5' | -57.6 | NC_006938.1 | + | 43846 | 0.66 | 0.671976 |
Target: 5'- gCGGUgGCUGGuCCGggucCGgcGGGUCCu -3' miRNA: 3'- aGCCAgCGGCU-GGUga--GCuuCCCAGG- -5' |
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31739 | 5' | -57.6 | NC_006938.1 | + | 30649 | 0.66 | 0.671976 |
Target: 5'- cUCGGgaugaugaagCGCUgGACCACgUUGAucuucGGGUCCc -3' miRNA: 3'- -AGCCa---------GCGG-CUGGUG-AGCUu----CCCAGG- -5' |
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31739 | 5' | -57.6 | NC_006938.1 | + | 25161 | 0.66 | 0.661472 |
Target: 5'- -aGGUCagGCCG-CCAC-CGGagAGGaGUCCa -3' miRNA: 3'- agCCAG--CGGCuGGUGaGCU--UCC-CAGG- -5' |
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31739 | 5' | -57.6 | NC_006938.1 | + | 352 | 0.67 | 0.640397 |
Target: 5'- aUUGcUCGCuCGACaACUCGAAcGaGGUCCg -3' miRNA: 3'- -AGCcAGCG-GCUGgUGAGCUU-C-CCAGG- -5' |
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31739 | 5' | -57.6 | NC_006938.1 | + | 60074 | 0.67 | 0.640397 |
Target: 5'- cUGGUCGU--GCCACUCGgGAGGGa-- -3' miRNA: 3'- aGCCAGCGgcUGGUGAGC-UUCCCagg -5' |
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31739 | 5' | -57.6 | NC_006938.1 | + | 55589 | 0.68 | 0.564779 |
Target: 5'- -gGGUCGCCGAgCACgaggauggggacgUCGAAGgagaggaGGUCUu -3' miRNA: 3'- agCCAGCGGCUgGUG-------------AGCUUC-------CCAGG- -5' |
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31739 | 5' | -57.6 | NC_006938.1 | + | 35897 | 0.68 | 0.535919 |
Target: 5'- --aGUCGCCGA--GCUCGGGaaacccacGGGUCCg -3' miRNA: 3'- agcCAGCGGCUggUGAGCUU--------CCCAGG- -5' |
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31739 | 5' | -57.6 | NC_006938.1 | + | 30871 | 0.68 | 0.525734 |
Target: 5'- aUCGGcUCGCCGGu--CUCG--GGGUCCu -3' miRNA: 3'- -AGCC-AGCGGCUgguGAGCuuCCCAGG- -5' |
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31739 | 5' | -57.6 | NC_006938.1 | + | 37467 | 0.66 | 0.682446 |
Target: 5'- -aGGUCuGUCGGCUGCUUGccGGGgacUCCu -3' miRNA: 3'- agCCAG-CGGCUGGUGAGCuuCCC---AGG- -5' |
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31739 | 5' | -57.6 | NC_006938.1 | + | 10912 | 0.66 | 0.692872 |
Target: 5'- cCaGUCGCUGuugcGCCGCUCGAaacccgacgagAGGGUg- -3' miRNA: 3'- aGcCAGCGGC----UGGUGAGCU-----------UCCCAgg -5' |
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31739 | 5' | -57.6 | NC_006938.1 | + | 36644 | 0.76 | 0.205558 |
Target: 5'- aCGGgccgCGCCGGuCCACUUGGAguGGGUCa -3' miRNA: 3'- aGCCa---GCGGCU-GGUGAGCUU--CCCAGg -5' |
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31739 | 5' | -57.6 | NC_006938.1 | + | 45749 | 0.7 | 0.447342 |
Target: 5'- -aGG-CGCgGGCCGcCUCGAucaugAGGGUCUu -3' miRNA: 3'- agCCaGCGgCUGGU-GAGCU-----UCCCAGG- -5' |
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31739 | 5' | -57.6 | NC_006938.1 | + | 55276 | 0.83 | 0.061328 |
Target: 5'- cCGGUCGCCGACCAC-CGGGaGGUCUc -3' miRNA: 3'- aGCCAGCGGCUGGUGaGCUUcCCAGG- -5' |
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31739 | 5' | -57.6 | NC_006938.1 | + | 45378 | 0.7 | 0.419645 |
Target: 5'- cUGGUguCCGGCCGCgCGGAGGGcgUCCa -3' miRNA: 3'- aGCCAgcGGCUGGUGaGCUUCCC--AGG- -5' |
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31739 | 5' | -57.6 | NC_006938.1 | + | 52751 | 0.74 | 0.257624 |
Target: 5'- gCGcGUCuuGCCGAUCuuCUCGAAGuGGUCCg -3' miRNA: 3'- aGC-CAG--CGGCUGGu-GAGCUUC-CCAGG- -5' |
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31739 | 5' | -57.6 | NC_006938.1 | + | 40319 | 1.12 | 0.000526 |
Target: 5'- cUCGGUCGCCGACCACUCGAAGGGUCCg -3' miRNA: 3'- -AGCCAGCGGCUGGUGAGCUUCCCAGG- -5' |
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31739 | 5' | -57.6 | NC_006938.1 | + | 24027 | 0.7 | 0.419645 |
Target: 5'- gCGGUgGCCGuGCCAC-CGAacuuggcaaccuGGGcGUCCa -3' miRNA: 3'- aGCCAgCGGC-UGGUGaGCU------------UCC-CAGG- -5' |
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31739 | 5' | -57.6 | NC_006938.1 | + | 31600 | 0.72 | 0.343155 |
Target: 5'- cCGGUUGCCauaGCCA---GAGGGGUCCg -3' miRNA: 3'- aGCCAGCGGc--UGGUgagCUUCCCAGG- -5' |
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31739 | 5' | -57.6 | NC_006938.1 | + | 17240 | 0.69 | 0.505592 |
Target: 5'- cUCGGacgugacCGCCcuGCCACUUGGaucgaucguGGGGUCCu -3' miRNA: 3'- -AGCCa------GCGGc-UGGUGAGCU---------UCCCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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