Results 1 - 20 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31740 | 3' | -61 | NC_006938.1 | + | 1430 | 0.68 | 0.330675 |
Target: 5'- cGCCACGGGCCGGGuGCaCUAccUGcCaCCGc -3' miRNA: 3'- aCGGUGCCCGGCUU-CG-GGU--ACaG-GGU- -5' |
|||||||
31740 | 3' | -61 | NC_006938.1 | + | 7659 | 0.68 | 0.320745 |
Target: 5'- gGCCACGGuguccgggcaccugGCCGGAGCCCucg-CUCGc -3' miRNA: 3'- aCGGUGCC--------------CGGCUUCGGGuacaGGGU- -5' |
|||||||
31740 | 3' | -61 | NC_006938.1 | + | 8893 | 0.67 | 0.38797 |
Target: 5'- aUGCCAgCGGGCCGcguccAGGCcgCCAUGggaUCCAc -3' miRNA: 3'- -ACGGU-GCCCGGC-----UUCG--GGUACa--GGGU- -5' |
|||||||
31740 | 3' | -61 | NC_006938.1 | + | 10897 | 0.66 | 0.451412 |
Target: 5'- -cCCACGGGUCuGGGCCCA-GUCgCu -3' miRNA: 3'- acGGUGCCCGGcUUCGGGUaCAGgGu -5' |
|||||||
31740 | 3' | -61 | NC_006938.1 | + | 11140 | 0.68 | 0.330675 |
Target: 5'- cUGUCACGGGCCGGuuguugccaccGCCC-UGgcCCCGu -3' miRNA: 3'- -ACGGUGCCCGGCUu----------CGGGuACa-GGGU- -5' |
|||||||
31740 | 3' | -61 | NC_006938.1 | + | 17400 | 0.67 | 0.370949 |
Target: 5'- -uCCAgGGGCUGcGAGCCgAaGUCCCGu -3' miRNA: 3'- acGGUgCCCGGC-UUCGGgUaCAGGGU- -5' |
|||||||
31740 | 3' | -61 | NC_006938.1 | + | 17516 | 0.73 | 0.143621 |
Target: 5'- uUGCCaucgacgGCGGGCCGAAGCaCUAccUCCCGg -3' miRNA: 3'- -ACGG-------UGCCCGGCUUCG-GGUacAGGGU- -5' |
|||||||
31740 | 3' | -61 | NC_006938.1 | + | 17769 | 0.66 | 0.464772 |
Target: 5'- gUGgCACGGGCCucGGCCUuguugccggcgaaucGUGUCUUg -3' miRNA: 3'- -ACgGUGCCCGGcuUCGGG---------------UACAGGGu -5' |
|||||||
31740 | 3' | -61 | NC_006938.1 | + | 24474 | 0.66 | 0.451412 |
Target: 5'- aUGgCACcgGGGCCGAAGagCCAgGUCUCGu -3' miRNA: 3'- -ACgGUG--CCCGGCUUCg-GGUaCAGGGU- -5' |
|||||||
31740 | 3' | -61 | NC_006938.1 | + | 26137 | 0.69 | 0.286721 |
Target: 5'- gGCCACGGGCCGc-GCCgG-GUCUa- -3' miRNA: 3'- aCGGUGCCCGGCuuCGGgUaCAGGgu -5' |
|||||||
31740 | 3' | -61 | NC_006938.1 | + | 26494 | 0.67 | 0.362632 |
Target: 5'- -cUCACGcuGCCGggGCCUcugGUCCCAc -3' miRNA: 3'- acGGUGCc-CGGCuuCGGGua-CAGGGU- -5' |
|||||||
31740 | 3' | -61 | NC_006938.1 | + | 26523 | 0.66 | 0.460934 |
Target: 5'- gUGaCAgGGGCCGGG--UCAUGUCCCGc -3' miRNA: 3'- -ACgGUgCCCGGCUUcgGGUACAGGGU- -5' |
|||||||
31740 | 3' | -61 | NC_006938.1 | + | 31427 | 0.66 | 0.451412 |
Target: 5'- cUGCgAgcCGGGCaggGGAGCCCAg--CCCAc -3' miRNA: 3'- -ACGgU--GCCCGg--CUUCGGGUacaGGGU- -5' |
|||||||
31740 | 3' | -61 | NC_006938.1 | + | 32591 | 0.66 | 0.413543 |
Target: 5'- gUGCCacgaccaacccguACGGGCCGggGCacaaCGUggucaaGUUCCAc -3' miRNA: 3'- -ACGG-------------UGCCCGGCuuCGg---GUA------CAGGGU- -5' |
|||||||
31740 | 3' | -61 | NC_006938.1 | + | 34397 | 0.68 | 0.339252 |
Target: 5'- gGCCAgCGGuggcauaugacucgGCCGAGGCCCcucuugugcagaucgAUGUCCUc -3' miRNA: 3'- aCGGU-GCC--------------CGGCUUCGGG---------------UACAGGGu -5' |
|||||||
31740 | 3' | -61 | NC_006938.1 | + | 34566 | 0.67 | 0.379395 |
Target: 5'- gGCCA-GGGUCGGAGCgaAUG-CCCGg -3' miRNA: 3'- aCGGUgCCCGGCUUCGggUACaGGGU- -5' |
|||||||
31740 | 3' | -61 | NC_006938.1 | + | 35683 | 0.72 | 0.1872 |
Target: 5'- cGCCA-GGGa-GGAGCCCAaguuccUGUCCCAg -3' miRNA: 3'- aCGGUgCCCggCUUCGGGU------ACAGGGU- -5' |
|||||||
31740 | 3' | -61 | NC_006938.1 | + | 36640 | 0.67 | 0.39667 |
Target: 5'- gGUCACGGGCCGc-GCCg--GUCCa- -3' miRNA: 3'- aCGGUGCCCGGCuuCGGguaCAGGgu -5' |
|||||||
31740 | 3' | -61 | NC_006938.1 | + | 39117 | 1.08 | 0.000393 |
Target: 5'- gUGCCACGGGCCGAAGCCCAUGUCCCAc -3' miRNA: 3'- -ACGGUGCCCGGCUUCGGGUACAGGGU- -5' |
|||||||
31740 | 3' | -61 | NC_006938.1 | + | 39300 | 0.72 | 0.168694 |
Target: 5'- aGCaGCGGGUCGAAGUCCAUGUggcggucggUCCGg -3' miRNA: 3'- aCGgUGCCCGGCUUCGGGUACA---------GGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home