miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31740 5' -56.4 NC_006938.1 + 55265 0.66 0.72597
Target:  5'- aGGcAGAcGAgccgGUCGCCGACCaccgggaGGUCu -3'
miRNA:   3'- -CCaUCUcCUa---CAGCGGCUGGga-----CCAG- -5'
31740 5' -56.4 NC_006938.1 + 52188 0.66 0.715551
Target:  5'- cGGUGGAGGcgGugguggcaucuUCGgCGGCCUguuUGGUg -3'
miRNA:   3'- -CCAUCUCCuaC-----------AGCgGCUGGG---ACCAg -5'
31740 5' -56.4 NC_006938.1 + 39274 0.67 0.662485
Target:  5'- cGUGGAGGcgcuUGUUGCCGuCCaugagcagcgGGUCg -3'
miRNA:   3'- cCAUCUCCu---ACAGCGGCuGGga--------CCAG- -5'
31740 5' -56.4 NC_006938.1 + 22477 0.67 0.640998
Target:  5'- uGGUgaguucGGGGGAUGUCGagGACCC-GGcCa -3'
miRNA:   3'- -CCA------UCUCCUACAGCggCUGGGaCCaG- -5'
31740 5' -56.4 NC_006938.1 + 51981 0.67 0.640998
Target:  5'- cGUGGAGGAccUCGCagaGACCgUGGa- -3'
miRNA:   3'- cCAUCUCCUacAGCGg--CUGGgACCag -5'
31740 5' -56.4 NC_006938.1 + 8041 0.67 0.630238
Target:  5'- --gAGAcGGAgagGUCGCCGAggcguggccccuCCgUGGUCg -3'
miRNA:   3'- ccaUCU-CCUa--CAGCGGCU------------GGgACCAG- -5'
31740 5' -56.4 NC_006938.1 + 23163 0.67 0.61948
Target:  5'- uGGUggcGGAGGAaagcgacccGUCuaccaccuGCCGACCCUGGa- -3'
miRNA:   3'- -CCA---UCUCCUa--------CAG--------CGGCUGGGACCag -5'
31740 5' -56.4 NC_006938.1 + 36515 0.67 0.61948
Target:  5'- --aGGGGGAUGagaucccucUCGCCGACCUggcccGUCg -3'
miRNA:   3'- ccaUCUCCUAC---------AGCGGCUGGGac---CAG- -5'
31740 5' -56.4 NC_006938.1 + 37944 0.67 0.61948
Target:  5'- cGGUGGAGG----CGUCGGCUCUGG-Cg -3'
miRNA:   3'- -CCAUCUCCuacaGCGGCUGGGACCaG- -5'
31740 5' -56.4 NC_006938.1 + 52245 0.67 0.61948
Target:  5'- uGGUGGAGGAgGUgGCCuguucggagGGCUCggcGGUCu -3'
miRNA:   3'- -CCAUCUCCUaCAgCGG---------CUGGGa--CCAG- -5'
31740 5' -56.4 NC_006938.1 + 29990 0.68 0.613029
Target:  5'- cGGUGGcGGcacgGUUGCCGACgaaccggacgcgguaUCUGGUCu -3'
miRNA:   3'- -CCAUCuCCua--CAGCGGCUG---------------GGACCAG- -5'
31740 5' -56.4 NC_006938.1 + 28160 0.68 0.608732
Target:  5'- --gGGAGGcgGUUGCCGcCCCUGc-- -3'
miRNA:   3'- ccaUCUCCuaCAGCGGCuGGGACcag -5'
31740 5' -56.4 NC_006938.1 + 17464 0.69 0.544937
Target:  5'- uGGUcgagaGGGGGAUGUCGuuuCCGGCCgUGccGUCu -3'
miRNA:   3'- -CCA-----UCUCCUACAGC---GGCUGGgAC--CAG- -5'
31740 5' -56.4 NC_006938.1 + 51551 0.69 0.524116
Target:  5'- uGGUGG-GGAUGUccuucggagcgaCGUCGacGCCCUGGaUCa -3'
miRNA:   3'- -CCAUCuCCUACA------------GCGGC--UGGGACC-AG- -5'
31740 5' -56.4 NC_006938.1 + 9201 0.69 0.503607
Target:  5'- uGUAGAGGGccUCGCCGACCaguaucCUGG-Cg -3'
miRNA:   3'- cCAUCUCCUacAGCGGCUGG------GACCaG- -5'
31740 5' -56.4 NC_006938.1 + 61193 0.71 0.407119
Target:  5'- cGGUGGGccAUGUCGgcgaCGGCCUUGGUCu -3'
miRNA:   3'- -CCAUCUccUACAGCg---GCUGGGACCAG- -5'
31740 5' -56.4 NC_006938.1 + 47277 0.72 0.363413
Target:  5'- cGGgccAGGGGcUGUCGCCGACCCa---- -3'
miRNA:   3'- -CCa--UCUCCuACAGCGGCUGGGaccag -5'
31740 5' -56.4 NC_006938.1 + 30836 0.72 0.355071
Target:  5'- -cUGGAGGAgGUCGCCGAgguCUCUGGg- -3'
miRNA:   3'- ccAUCUCCUaCAGCGGCU---GGGACCag -5'
31740 5' -56.4 NC_006938.1 + 23068 0.74 0.27919
Target:  5'- --cGGAGGAagcgggGUUcgGCUGGCCCUGGUCg -3'
miRNA:   3'- ccaUCUCCUa-----CAG--CGGCUGGGACCAG- -5'
31740 5' -56.4 NC_006938.1 + 39151 1.12 0.000573
Target:  5'- cGGUAGAGGAUGUCGCCGACCCUGGUCa -3'
miRNA:   3'- -CCAUCUCCUACAGCGGCUGGGACCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.