miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31741 5' -53.7 NC_006938.1 + 1064 0.66 0.839466
Target:  5'- --gCGAGGuCGUCcggaUCCAGCACUCGu- -3'
miRNA:   3'- aagGUUCU-GCAGa---AGGUCGUGAGCcc -5'
31741 5' -53.7 NC_006938.1 + 41866 0.66 0.830533
Target:  5'- gUCCAGGuCGUCUaUCuCAGagaGC-CGGGg -3'
miRNA:   3'- aAGGUUCuGCAGA-AG-GUCg--UGaGCCC- -5'
31741 5' -53.7 NC_006938.1 + 16703 0.66 0.821388
Target:  5'- -gCCAcuacaggaagGGAgGUCagUUCCAGCACU-GGGa -3'
miRNA:   3'- aaGGU----------UCUgCAG--AAGGUCGUGAgCCC- -5'
31741 5' -53.7 NC_006938.1 + 41031 0.67 0.762676
Target:  5'- cUCC-AGGCGUCgcugUUC-GCGuCUCGGGa -3'
miRNA:   3'- aAGGuUCUGCAGa---AGGuCGU-GAGCCC- -5'
31741 5' -53.7 NC_006938.1 + 14745 0.67 0.741904
Target:  5'- cUUCAGGGCaGUCUcaUCCAGgCACaaGGGa -3'
miRNA:   3'- aAGGUUCUG-CAGA--AGGUC-GUGagCCC- -5'
31741 5' -53.7 NC_006938.1 + 2554 0.68 0.720684
Target:  5'- cUUCCAcaAGugGUCccUgCAGCACgcCGGGg -3'
miRNA:   3'- -AAGGU--UCugCAGa-AgGUCGUGa-GCCC- -5'
31741 5' -53.7 NC_006938.1 + 60058 0.69 0.677273
Target:  5'- -aCCAGGccGCGUCgaucuggUCguGcCACUCGGGa -3'
miRNA:   3'- aaGGUUC--UGCAGa------AGguC-GUGAGCCC- -5'
31741 5' -53.7 NC_006938.1 + 41254 0.69 0.633167
Target:  5'- cUCgAAGACGUgCUccagCCAGCGCUCGuGa -3'
miRNA:   3'- aAGgUUCUGCA-GAa---GGUCGUGAGC-Cc -5'
31741 5' -53.7 NC_006938.1 + 50433 0.7 0.611067
Target:  5'- aUCgGAGGCGcggCUgucaUCCAGaCAUUCGGGa -3'
miRNA:   3'- aAGgUUCUGCa--GA----AGGUC-GUGAGCCC- -5'
31741 5' -53.7 NC_006938.1 + 21646 0.72 0.466084
Target:  5'- -aCCAGGGCGacgugggccgcgcgCgggUCCAGCugUCGGGc -3'
miRNA:   3'- aaGGUUCUGCa-------------Ga--AGGUCGugAGCCC- -5'
31741 5' -53.7 NC_006938.1 + 51169 0.72 0.4521
Target:  5'- -aCCAgacGGugGUCUugUCCAGCuCUCGGa -3'
miRNA:   3'- aaGGU---UCugCAGA--AGGUCGuGAGCCc -5'
31741 5' -53.7 NC_006938.1 + 38848 1.09 0.001766
Target:  5'- cUUCCAAGACGUCUUCCAGCACUCGGGa -3'
miRNA:   3'- -AAGGUUCUGCAGAAGGUCGUGAGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.