miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31745 3' -62.1 NC_006938.1 + 3774 0.66 0.381056
Target:  5'- -cGGGCgCGGUGGCaagGgUGgcaUCGCCCg -3'
miRNA:   3'- gaCCCG-GUCGCCGaa-CgAC---AGCGGGa -5'
31745 3' -62.1 NC_006938.1 + 204 0.66 0.381056
Target:  5'- gUGGGCgAcCGGCUcGCcGcCGCCCUu -3'
miRNA:   3'- gACCCGgUcGCCGAaCGaCaGCGGGA- -5'
31745 3' -62.1 NC_006938.1 + 45997 0.66 0.37259
Target:  5'- cCUGGGCC-GCGuCcagGUUGUCGCCg- -3'
miRNA:   3'- -GACCCGGuCGCcGaa-CGACAGCGGga -5'
31745 3' -62.1 NC_006938.1 + 5186 0.66 0.364253
Target:  5'- gCUGGGCCAGCGGCa-GCaGgaaCGCg-- -3'
miRNA:   3'- -GACCCGGUCGCCGaaCGaCa--GCGgga -5'
31745 3' -62.1 NC_006938.1 + 5724 0.67 0.324535
Target:  5'- -aGaGGCCGGUGGCUU-CUGgggaaaGCCCa -3'
miRNA:   3'- gaC-CCGGUCGCCGAAcGACag----CGGGa -5'
31745 3' -62.1 NC_006938.1 + 60092 0.67 0.302294
Target:  5'- -aGGGaCgAGCGGCUgguugaacggauUGUucggGUCGCCCUu -3'
miRNA:   3'- gaCCC-GgUCGCCGA------------ACGa---CAGCGGGA- -5'
31745 3' -62.1 NC_006938.1 + 47277 0.67 0.302294
Target:  5'- -cGGGCCAGgGGC----UGUCGCCg- -3'
miRNA:   3'- gaCCCGGUCgCCGaacgACAGCGGga -5'
31745 3' -62.1 NC_006938.1 + 57974 0.68 0.267872
Target:  5'- gUGGGaCGGCGGCUcccUGCUccaGUCGCUg- -3'
miRNA:   3'- gACCCgGUCGCCGA---ACGA---CAGCGGga -5'
31745 3' -62.1 NC_006938.1 + 30744 0.69 0.242669
Target:  5'- -cGcGGCCAGCuuGGCgggGUUGUCGgCCUg -3'
miRNA:   3'- gaC-CCGGUCG--CCGaa-CGACAGCgGGA- -5'
31745 3' -62.1 NC_006938.1 + 55086 0.69 0.223389
Target:  5'- aCUGGGCCucuCGGCgcucgugccaguccgGCUccGUCGCCCa -3'
miRNA:   3'- -GACCCGGuc-GCCGaa-------------CGA--CAGCGGGa -5'
31745 3' -62.1 NC_006938.1 + 23700 0.71 0.168331
Target:  5'- aCUGGuGCCAGCGGCcuugGCUGUgacggucaggguugUGUCCg -3'
miRNA:   3'- -GACC-CGGUCGCCGaa--CGACA--------------GCGGGa -5'
31745 3' -62.1 NC_006938.1 + 63358 0.74 0.113818
Target:  5'- -aGGG-CGGCGGCgaGCcgGUCGCCCa -3'
miRNA:   3'- gaCCCgGUCGCCGaaCGa-CAGCGGGa -5'
31745 3' -62.1 NC_006938.1 + 35503 1.06 0.000344
Target:  5'- cCUGGGCCAGCGGCUUGCUGUCGCCCUu -3'
miRNA:   3'- -GACCCGGUCGCCGAACGACAGCGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.