miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31745 5' -56.7 NC_006938.1 + 61812 0.66 0.656436
Target:  5'- aCCAGAGCaggCCugGgGCCAgUUGCCAc -3'
miRNA:   3'- -GGUCUCGa--GGuaCgUGGUgAGCGGUu -5'
31745 5' -56.7 NC_006938.1 + 7886 0.66 0.656436
Target:  5'- gUCAGAGCUCUAcG-GCUGCUCGCUc- -3'
miRNA:   3'- -GGUCUCGAGGUaCgUGGUGAGCGGuu -5'
31745 5' -56.7 NC_006938.1 + 60709 0.66 0.64549
Target:  5'- cUCGGAGCguuaUgAUGguCCGCUUGCCGu -3'
miRNA:   3'- -GGUCUCGa---GgUACguGGUGAGCGGUu -5'
31745 5' -56.7 NC_006938.1 + 51032 0.66 0.6433
Target:  5'- aCCGGGGcCUCCGccgcguuugccaGCGCCAUccugaccaUCGCCAAc -3'
miRNA:   3'- -GGUCUC-GAGGUa-----------CGUGGUG--------AGCGGUU- -5'
31745 5' -56.7 NC_006938.1 + 56057 0.66 0.623572
Target:  5'- -gGGAGUggCCGgaUGCcaGCCACUCGUCGAc -3'
miRNA:   3'- ggUCUCGa-GGU--ACG--UGGUGAGCGGUU- -5'
31745 5' -56.7 NC_006938.1 + 14592 0.66 0.623572
Target:  5'- uCCAGAGacaUCCA-GCGggucuucacCCGCUCGCgGAu -3'
miRNA:   3'- -GGUCUCg--AGGUaCGU---------GGUGAGCGgUU- -5'
31745 5' -56.7 NC_006938.1 + 57787 0.66 0.61262
Target:  5'- uCCgAGAGCUCCGU-CACguuCUCGUCGAc -3'
miRNA:   3'- -GG-UCUCGAGGUAcGUGgu-GAGCGGUU- -5'
31745 5' -56.7 NC_006938.1 + 61350 0.67 0.601684
Target:  5'- gCCGGAGCacgUCUAUGaUGCCGCccUCGCCc- -3'
miRNA:   3'- -GGUCUCG---AGGUAC-GUGGUG--AGCGGuu -5'
31745 5' -56.7 NC_006938.1 + 8139 0.67 0.595134
Target:  5'- cCCuGGGCUCCuauggagacucggccGUGCACCGauuugggaCGCCAAu -3'
miRNA:   3'- -GGuCUCGAGG---------------UACGUGGUga------GCGGUU- -5'
31745 5' -56.7 NC_006938.1 + 30529 0.67 0.547561
Target:  5'- aCGGAGCUCCuc-CACCugccCUCGCUg- -3'
miRNA:   3'- gGUCUCGAGGuacGUGGu---GAGCGGuu -5'
31745 5' -56.7 NC_006938.1 + 5843 0.68 0.536904
Target:  5'- -uGGAGCUCaCAUGCACCAggaaggucgUGCCGu -3'
miRNA:   3'- ggUCUCGAG-GUACGUGGUga-------GCGGUu -5'
31745 5' -56.7 NC_006938.1 + 41388 0.68 0.536904
Target:  5'- gCCGGuccuuguGCUCCAUcCACCACUUcCCGAg -3'
miRNA:   3'- -GGUCu------CGAGGUAcGUGGUGAGcGGUU- -5'
31745 5' -56.7 NC_006938.1 + 10978 0.68 0.515814
Target:  5'- aCCuGGGCUCCAcGCuCCACgUCGUCu- -3'
miRNA:   3'- -GGuCUCGAGGUaCGuGGUG-AGCGGuu -5'
31745 5' -56.7 NC_006938.1 + 22036 0.68 0.505395
Target:  5'- gCCGGGGCUCCAgagGaCGCCACgucaGCa-- -3'
miRNA:   3'- -GGUCUCGAGGUa--C-GUGGUGag--CGguu -5'
31745 5' -56.7 NC_006938.1 + 30855 0.68 0.505395
Target:  5'- gCAGAGCUgCuUGCGgauCgGCUCGCCGGu -3'
miRNA:   3'- gGUCUCGAgGuACGU---GgUGAGCGGUU- -5'
31745 5' -56.7 NC_006938.1 + 36694 0.68 0.491987
Target:  5'- aCAGAGC-CCAcUGCGaggagagcauccguCCGCUCGUCGAc -3'
miRNA:   3'- gGUCUCGaGGU-ACGU--------------GGUGAGCGGUU- -5'
31745 5' -56.7 NC_006938.1 + 7224 0.69 0.474707
Target:  5'- cCUGGAGCUCCGgcgcaacacaaUGCACgGCcgcaaUCGCCGc -3'
miRNA:   3'- -GGUCUCGAGGU-----------ACGUGgUG-----AGCGGUu -5'
31745 5' -56.7 NC_006938.1 + 24569 0.69 0.454775
Target:  5'- gCCAGAGg-CCAUGCGC-GCUCGCg-- -3'
miRNA:   3'- -GGUCUCgaGGUACGUGgUGAGCGguu -5'
31745 5' -56.7 NC_006938.1 + 21625 0.7 0.416324
Target:  5'- uCCAGAGa-CCAgggUGCcCCGCUCGUCGAa -3'
miRNA:   3'- -GGUCUCgaGGU---ACGuGGUGAGCGGUU- -5'
31745 5' -56.7 NC_006938.1 + 56350 0.7 0.407025
Target:  5'- gCCGGAGCUCCAgGC-CCug-CGCCu- -3'
miRNA:   3'- -GGUCUCGAGGUaCGuGGugaGCGGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.