miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31746 3' -53.4 NC_006938.1 + 37713 0.66 0.859886
Target:  5'- cGGUccgcaagGAGCUCGuGGAcaagaaggucaucccCGAGgCCCACg -3'
miRNA:   3'- -CCAa------CUUGAGCuCCUu--------------GCUCgGGGUG- -5'
31746 3' -53.4 NC_006938.1 + 53757 0.66 0.859063
Target:  5'- ---cGAACUUGAGaaacucGAugGAGCCgUACg -3'
miRNA:   3'- ccaaCUUGAGCUC------CUugCUCGGgGUG- -5'
31746 3' -53.4 NC_006938.1 + 39382 0.66 0.859063
Target:  5'- ---cGGugUUGAGG-ACGGGCaCUCGCa -3'
miRNA:   3'- ccaaCUugAGCUCCuUGCUCG-GGGUG- -5'
31746 3' -53.4 NC_006938.1 + 25829 0.66 0.848138
Target:  5'- --gUGGGcCUCGGGGAugaccuucuuguccACGAGCUCCuuGCg -3'
miRNA:   3'- ccaACUU-GAGCUCCU--------------UGCUCGGGG--UG- -5'
31746 3' -53.4 NC_006938.1 + 34809 0.66 0.845562
Target:  5'- ---cGAGCUCGggcaccucGGGAugGAcaaaggugcacucgaGCCCCAUg -3'
miRNA:   3'- ccaaCUUGAGC--------UCCUugCU---------------CGGGGUG- -5'
31746 3' -53.4 NC_006938.1 + 13177 0.66 0.842096
Target:  5'- aGGUUGAug-CGAcGAGCGguGGCCuCCGCu -3'
miRNA:   3'- -CCAACUugaGCUcCUUGC--UCGG-GGUG- -5'
31746 3' -53.4 NC_006938.1 + 8997 0.66 0.842096
Target:  5'- uGUUGAACgccucUCGAGuGGucaagACGGcaguGCCCCACg -3'
miRNA:   3'- cCAACUUG-----AGCUC-CU-----UGCU----CGGGGUG- -5'
31746 3' -53.4 NC_006938.1 + 35903 0.66 0.833279
Target:  5'- ---cGAGCUCG-GGAaacccACGGGUCCgCACc -3'
miRNA:   3'- ccaaCUUGAGCuCCU-----UGCUCGGG-GUG- -5'
31746 3' -53.4 NC_006938.1 + 3272 0.67 0.824251
Target:  5'- aGGagGAGCUCGAccagcacuGGGACaAGCCCUg- -3'
miRNA:   3'- -CCaaCUUGAGCU--------CCUUGcUCGGGGug -5'
31746 3' -53.4 NC_006938.1 + 50838 0.67 0.815021
Target:  5'- --cUGggUgugaCGcGGGGCGAGCUCCGCc -3'
miRNA:   3'- ccaACuuGa---GCuCCUUGCUCGGGGUG- -5'
31746 3' -53.4 NC_006938.1 + 32685 0.67 0.795997
Target:  5'- ---cGAGUUCGAGGAccccgagaccgGCGAGCCgauCCGCa -3'
miRNA:   3'- ccaaCUUGAGCUCCU-----------UGCUCGG---GGUG- -5'
31746 3' -53.4 NC_006938.1 + 15708 0.67 0.786223
Target:  5'- uGGUcGAcuGCaggaCGGGGAGCGAGCCgCCu- -3'
miRNA:   3'- -CCAaCU--UGa---GCUCCUUGCUCGG-GGug -5'
31746 3' -53.4 NC_006938.1 + 2332 0.68 0.766208
Target:  5'- cGUUGAACgCGAGGA-UGuAGCCUCGa -3'
miRNA:   3'- cCAACUUGaGCUCCUuGC-UCGGGGUg -5'
31746 3' -53.4 NC_006938.1 + 15388 0.68 0.745642
Target:  5'- gGGaUUGGGCUUGccGAGCGuccGCUCCACa -3'
miRNA:   3'- -CC-AACUUGAGCucCUUGCu--CGGGGUG- -5'
31746 3' -53.4 NC_006938.1 + 62011 0.68 0.735182
Target:  5'- uGGUUGGcguACgUGAcGAGCGAGUCCCAg -3'
miRNA:   3'- -CCAACU---UGaGCUcCUUGCUCGGGGUg -5'
31746 3' -53.4 NC_006938.1 + 6012 0.69 0.692422
Target:  5'- --gUGAAgUCgggauGAGGGGCGAucuaGCCCCACc -3'
miRNA:   3'- ccaACUUgAG-----CUCCUUGCU----CGGGGUG- -5'
31746 3' -53.4 NC_006938.1 + 43759 0.69 0.692422
Target:  5'- ---cGAGCUUGAGGuagucACG-GUCCCACu -3'
miRNA:   3'- ccaaCUUGAGCUCCu----UGCuCGGGGUG- -5'
31746 3' -53.4 NC_006938.1 + 30599 0.71 0.593842
Target:  5'- ---aGAACg-GGGcGGACGAGCCCCAg -3'
miRNA:   3'- ccaaCUUGagCUC-CUUGCUCGGGGUg -5'
31746 3' -53.4 NC_006938.1 + 12711 0.73 0.4376
Target:  5'- cGGUgccGAGCUgGcGGAGCucGCCCCGCg -3'
miRNA:   3'- -CCAa--CUUGAgCuCCUUGcuCGGGGUG- -5'
31746 3' -53.4 NC_006938.1 + 56638 0.82 0.13549
Target:  5'- -aUUGAACUUGGGGAACG-GCCCCGg -3'
miRNA:   3'- ccAACUUGAGCUCCUUGCuCGGGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.