miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31746 5' -57.7 NC_006938.1 + 58986 0.66 0.665424
Target:  5'- aGGCcGAGCUCCAGCgCGC-UGccucaauccUCGUGg -3'
miRNA:   3'- gCUGcCUCGAGGUCG-GUGcAC---------AGCAC- -5'
31746 5' -57.7 NC_006938.1 + 56348 0.66 0.654793
Target:  5'- gCGcCGGAGCUCCAgGCCcuGCGccugGUCa-- -3'
miRNA:   3'- -GCuGCCUCGAGGU-CGG--UGCa---CAGcac -5'
31746 5' -57.7 NC_006938.1 + 29144 0.66 0.643077
Target:  5'- gGGCGGcuggucuGGCUCCGGC-ACGaUGUCGc- -3'
miRNA:   3'- gCUGCC-------UCGAGGUCGgUGC-ACAGCac -5'
31746 5' -57.7 NC_006938.1 + 41395 0.68 0.538482
Target:  5'- uCGACGG-GCUCguCGGCCuguggGUCGUGg -3'
miRNA:   3'- -GCUGCCuCGAG--GUCGGugca-CAGCAC- -5'
31746 5' -57.7 NC_006938.1 + 12086 0.68 0.527146
Target:  5'- uCGACuGccccGGCUCCGGCCGCGacgaggaUGUCGa- -3'
miRNA:   3'- -GCUGcC----UCGAGGUCGGUGC-------ACAGCac -5'
31746 5' -57.7 NC_006938.1 + 25711 0.68 0.497714
Target:  5'- aCGACGGAGCg-CGGCCcuucuGgGUGUaCGUGc -3'
miRNA:   3'- -GCUGCCUCGagGUCGG-----UgCACA-GCAC- -5'
31746 5' -57.7 NC_006938.1 + 30527 0.68 0.487735
Target:  5'- gGACGGAGCUCCuccaccuGCCcuCGcUGUCcUGg -3'
miRNA:   3'- gCUGCCUCGAGGu------CGGu-GC-ACAGcAC- -5'
31746 5' -57.7 NC_006938.1 + 41259 0.68 0.487735
Target:  5'- aGACGu-GCUCCAGCCAgCGc-UCGUGa -3'
miRNA:   3'- gCUGCcuCGAGGUCGGU-GCacAGCAC- -5'
31746 5' -57.7 NC_006938.1 + 21143 0.69 0.439354
Target:  5'- aGGCGucGCUCCGGCCGCGUcggCGa- -3'
miRNA:   3'- gCUGCcuCGAGGUCGGUGCAca-GCac -5'
31746 5' -57.7 NC_006938.1 + 55889 0.7 0.39383
Target:  5'- gCGAgCGaGGGCUCCGGCCAgGUGcccggacacCGUGg -3'
miRNA:   3'- -GCU-GC-CUCGAGGUCGGUgCACa--------GCAC- -5'
31746 5' -57.7 NC_006938.1 + 48456 0.71 0.343403
Target:  5'- uGGCGGAGgUCCGGCCcACGcagucUGgCGUGg -3'
miRNA:   3'- gCUGCCUCgAGGUCGG-UGC-----ACaGCAC- -5'
31746 5' -57.7 NC_006938.1 + 49322 0.76 0.184391
Target:  5'- aGACGGAGCacccUCCGGCCGCcuGUGUCu-- -3'
miRNA:   3'- gCUGCCUCG----AGGUCGGUG--CACAGcac -5'
31746 5' -57.7 NC_006938.1 + 34912 0.98 0.004834
Target:  5'- gCGACGGAGCUCCAGCCAC-UGUCGUGg -3'
miRNA:   3'- -GCUGCCUCGAGGUCGGUGcACAGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.