miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31748 3' -59 NC_006938.1 + 60976 0.66 0.510407
Target:  5'- cUCCAGGAaccGGAccuGcCUGGAGACcccggcgugcuGCAGGGa -3'
miRNA:   3'- -AGGUCCU---CCU---C-GACCUCUG-----------CGUCCUc -5'
31748 3' -59 NC_006938.1 + 12787 0.68 0.441611
Target:  5'- cUCCAGGAcGGAGC-GGAGcucgucgccGCGCAGu-- -3'
miRNA:   3'- -AGGUCCU-CCUCGaCCUC---------UGCGUCcuc -5'
31748 3' -59 NC_006938.1 + 40594 0.68 0.435957
Target:  5'- gUCgAGGAccucaugcgcuccccGGAGCUGGcggaccGGugGCAGGuGg -3'
miRNA:   3'- -AGgUCCU---------------CCUCGACC------UCugCGUCCuC- -5'
31748 3' -59 NC_006938.1 + 15477 0.68 0.422929
Target:  5'- aCCAGGAGcGGGCU---GACGCGGGcGg -3'
miRNA:   3'- aGGUCCUC-CUCGAccuCUGCGUCCuC- -5'
31748 3' -59 NC_006938.1 + 17147 0.68 0.40473
Target:  5'- gUCUcGGAGGAGCUGaucGGCgGCGGGAu -3'
miRNA:   3'- -AGGuCCUCCUCGACcu-CUG-CGUCCUc -5'
31748 3' -59 NC_006938.1 + 42644 0.68 0.395818
Target:  5'- cCCAGuaccaaAGGAGCUGGu--CGCAGGAc -3'
miRNA:   3'- aGGUCc-----UCCUCGACCucuGCGUCCUc -5'
31748 3' -59 NC_006938.1 + 23487 0.69 0.353202
Target:  5'- aCCGGGcagAGGAGCUGcagaAGGCGgccCAGGAGg -3'
miRNA:   3'- aGGUCC---UCCUCGACc---UCUGC---GUCCUC- -5'
31748 3' -59 NC_006938.1 + 8430 0.7 0.337089
Target:  5'- cUCCAGGGcGucCUGGAaguGACGCAGGAa -3'
miRNA:   3'- -AGGUCCUcCucGACCU---CUGCGUCCUc -5'
31748 3' -59 NC_006938.1 + 52171 0.71 0.284967
Target:  5'- cUCCucgguGGAGGAgGCggUGGAGGCGguGGuGg -3'
miRNA:   3'- -AGGu----CCUCCU-CG--ACCUCUGCguCCuC- -5'
31748 3' -59 NC_006938.1 + 23000 0.72 0.251777
Target:  5'- aCCcGGAGGAcgGCUGGu--CGCGGGAGc -3'
miRNA:   3'- aGGuCCUCCU--CGACCucuGCGUCCUC- -5'
31748 3' -59 NC_006938.1 + 4272 0.74 0.16655
Target:  5'- uUCCAGGAGGAcGUgaacGGAGAgcCGguGGAGc -3'
miRNA:   3'- -AGGUCCUCCU-CGa---CCUCU--GCguCCUC- -5'
31748 3' -59 NC_006938.1 + 45663 0.75 0.155424
Target:  5'- gCCGGGAGGccgagaacGGCUGGAGcggacugagccaggaGCaGCAGGAGg -3'
miRNA:   3'- aGGUCCUCC--------UCGACCUC---------------UG-CGUCCUC- -5'
31748 3' -59 NC_006938.1 + 32747 1.09 0.000471
Target:  5'- cUCCAGGAGGAGCUGGAGACGCAGGAGg -3'
miRNA:   3'- -AGGUCCUCCUCGACCUCUGCGUCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.