miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31749 3' -53.2 NC_006938.1 + 53485 0.66 0.852847
Target:  5'- -----aCUAcGCGGACCUGucgcaGGGACa -3'
miRNA:   3'- aucuaaGAUcUGCCUGGACug---CCCUG- -5'
31749 3' -53.2 NC_006938.1 + 11303 0.66 0.8442
Target:  5'- aAGAcacUUCUGGugGGAa-UGGCaccGGGACa -3'
miRNA:   3'- aUCU---AAGAUCugCCUggACUG---CCCUG- -5'
31749 3' -53.2 NC_006938.1 + 28948 0.66 0.835325
Target:  5'- aAGAggCUcgAGGCcgcuGGCCUgGGCGGGACa -3'
miRNA:   3'- aUCUaaGA--UCUGc---CUGGA-CUGCCCUG- -5'
31749 3' -53.2 NC_006938.1 + 31201 0.66 0.835325
Target:  5'- gGGAc-CU-GAUGGACCUGACGG-ACc -3'
miRNA:   3'- aUCUaaGAuCUGCCUGGACUGCCcUG- -5'
31749 3' -53.2 NC_006938.1 + 2992 0.66 0.833524
Target:  5'- cAGAgcggaccuGAUGGACCUGACGG-ACc -3'
miRNA:   3'- aUCUaagau---CUGCCUGGACUGCCcUG- -5'
31749 3' -53.2 NC_006938.1 + 40103 0.67 0.797743
Target:  5'- gAGAccgaCUGGucgaugucGCGGAUCUGACGGGcCa -3'
miRNA:   3'- aUCUaa--GAUC--------UGCCUGGACUGCCCuG- -5'
31749 3' -53.2 NC_006938.1 + 57751 0.67 0.766636
Target:  5'- ----gUCgGGGCGGACCUGACccuggagguggagGGGAUc -3'
miRNA:   3'- aucuaAGaUCUGCCUGGACUG-------------CCCUG- -5'
31749 3' -53.2 NC_006938.1 + 2015 0.68 0.757335
Target:  5'- gAGGUccUCUcAGACGGACgCUGGUGGGuCa -3'
miRNA:   3'- aUCUA--AGA-UCUGCCUG-GACUGCCCuG- -5'
31749 3' -53.2 NC_006938.1 + 2392 0.7 0.637691
Target:  5'- -----cCUGGcCGGACCUGACGGuGCu -3'
miRNA:   3'- aucuaaGAUCuGCCUGGACUGCCcUG- -5'
31749 3' -53.2 NC_006938.1 + 60423 0.7 0.593249
Target:  5'- cGGAc-CU-GACGGACCUGAUGGGu- -3'
miRNA:   3'- aUCUaaGAuCUGCCUGGACUGCCCug -5'
31749 3' -53.2 NC_006938.1 + 12496 0.71 0.560235
Target:  5'- cGGAUag-AGAcCGGAgagauCCUGGCGGGACa -3'
miRNA:   3'- aUCUAagaUCU-GCCU-----GGACUGCCCUG- -5'
31749 3' -53.2 NC_006938.1 + 53614 0.72 0.49599
Target:  5'- cUGGAgcuccUCUGGAaGGACCUGGC-GGACg -3'
miRNA:   3'- -AUCUa----AGAUCUgCCUGGACUGcCCUG- -5'
31749 3' -53.2 NC_006938.1 + 21446 0.73 0.425589
Target:  5'- cAGAcagCUggAGACGGACCUcGGCGGGGa -3'
miRNA:   3'- aUCUaa-GA--UCUGCCUGGA-CUGCCCUg -5'
31749 3' -53.2 NC_006938.1 + 44564 0.74 0.406586
Target:  5'- gUGGAUgaUGGAgGGACCcacgaaUGACGGGACu -3'
miRNA:   3'- -AUCUAagAUCUgCCUGG------ACUGCCCUG- -5'
31749 3' -53.2 NC_006938.1 + 2910 0.76 0.289433
Target:  5'- -cGAagUCcgAG-CGGACCUGACGGGACc -3'
miRNA:   3'- auCUa-AGa-UCuGCCUGGACUGCCCUG- -5'
31749 3' -53.2 NC_006938.1 + 32206 1.07 0.002391
Target:  5'- gUAGAUUCUAGACGGACCUGACGGGACc -3'
miRNA:   3'- -AUCUAAGAUCUGCCUGGACUGCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.