miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31749 5' -53.9 NC_006938.1 + 34760 0.66 0.836175
Target:  5'- -gGCaUCCGUguGGUCuCGAGcaUCACg -3'
miRNA:   3'- agUGgAGGCAguCCAG-GCUCuaAGUG- -5'
31749 5' -53.9 NC_006938.1 + 62535 0.66 0.826321
Target:  5'- gCGCCUCUGUgAGGUguaugacCCGAucgUCACu -3'
miRNA:   3'- aGUGGAGGCAgUCCA-------GGCUcuaAGUG- -5'
31749 5' -53.9 NC_006938.1 + 5890 0.67 0.789495
Target:  5'- gUCACaaugUCUGUCGGGUCCaGGGUgaggUACu -3'
miRNA:   3'- -AGUGg---AGGCAGUCCAGGcUCUAa---GUG- -5'
31749 5' -53.9 NC_006938.1 + 42947 0.67 0.769609
Target:  5'- gUugC-CUGUCAGGucgaUCCGAGAguaUCGCa -3'
miRNA:   3'- aGugGaGGCAGUCC----AGGCUCUa--AGUG- -5'
31749 5' -53.9 NC_006938.1 + 12405 0.68 0.728237
Target:  5'- -gACCaCCGUCuGGuUCCGGGAgaacgUUCGCg -3'
miRNA:   3'- agUGGaGGCAGuCC-AGGCUCU-----AAGUG- -5'
31749 5' -53.9 NC_006938.1 + 16884 0.68 0.717627
Target:  5'- cCugCUCCGcUCGcuugagcagcuGGUCCGAGAccCACu -3'
miRNA:   3'- aGugGAGGC-AGU-----------CCAGGCUCUaaGUG- -5'
31749 5' -53.9 NC_006938.1 + 52635 0.68 0.696165
Target:  5'- aUCAcCCUCuCGUCGGGuUUCGAGcggCGCa -3'
miRNA:   3'- -AGU-GGAG-GCAGUCC-AGGCUCuaaGUG- -5'
31749 5' -53.9 NC_006938.1 + 5066 0.69 0.674458
Target:  5'- aCAUCUCUGUgCAGGUUgacaUGGGGUUUACu -3'
miRNA:   3'- aGUGGAGGCA-GUCCAG----GCUCUAAGUG- -5'
31749 5' -53.9 NC_006938.1 + 41822 0.69 0.674458
Target:  5'- -gGCCUCUGUCGGG-CCGAcGGUcaaCACc -3'
miRNA:   3'- agUGGAGGCAGUCCaGGCU-CUAa--GUG- -5'
31749 5' -53.9 NC_006938.1 + 16623 0.69 0.674458
Target:  5'- --gUgUCCGUCAGGUCCcaguaguaGAGcUUCACa -3'
miRNA:   3'- aguGgAGGCAGUCCAGG--------CUCuAAGUG- -5'
31749 5' -53.9 NC_006938.1 + 60563 0.7 0.60871
Target:  5'- -gACCggUCCGUCAGGUCCaucAGGUcCGCu -3'
miRNA:   3'- agUGG--AGGCAGUCCAGGc--UCUAaGUG- -5'
31749 5' -53.9 NC_006938.1 + 3140 0.7 0.607614
Target:  5'- aCACCcaucaggUCCGUCAGGUCCGc----CACg -3'
miRNA:   3'- aGUGG-------AGGCAGUCCAGGCucuaaGUG- -5'
31749 5' -53.9 NC_006938.1 + 5810 0.75 0.341636
Target:  5'- cCACCUCCaggGUCAGGUCCGccccgaccgugauGGAgcUCACa -3'
miRNA:   3'- aGUGGAGG---CAGUCCAGGC-------------UCUa-AGUG- -5'
31749 5' -53.9 NC_006938.1 + 60444 0.89 0.043744
Target:  5'- gUguCCUCCGUCAGGUCCGAGAUUguCa -3'
miRNA:   3'- -AguGGAGGCAGUCCAGGCUCUAAguG- -5'
31749 5' -53.9 NC_006938.1 + 32240 1.11 0.001283
Target:  5'- cUCACCUCCGUCAGGUCCGAGAUUCACa -3'
miRNA:   3'- -AGUGGAGGCAGUCCAGGCUCUAAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.