Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31750 | 3' | -58.1 | NC_006938.1 | + | 11075 | 0.68 | 0.508177 |
Target: 5'- --aCCUCGG-CGCGC--UGGAGCGGCa -3' miRNA: 3'- gugGGAGCUgGCGCGcuGCCUUGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 44107 | 0.68 | 0.49818 |
Target: 5'- cCACCaaCGGCaucaGgGUGACGG-ACAGCa -3' miRNA: 3'- -GUGGgaGCUGg---CgCGCUGCCuUGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 15469 | 0.68 | 0.488272 |
Target: 5'- uGgCCUCGACCaggaGCGggcUGACGcGGGCGGCa -3' miRNA: 3'- gUgGGAGCUGG----CGC---GCUGC-CUUGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 43454 | 0.68 | 0.518258 |
Target: 5'- gGCCCaggaGACCaCGCGGCGGAugcCAGa -3' miRNA: 3'- gUGGGag--CUGGcGCGCUGCCUu--GUCg -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 29604 | 0.68 | 0.528417 |
Target: 5'- uGCuCCUCG-UUGaucCGGCGGAGCAGCa -3' miRNA: 3'- gUG-GGAGCuGGCgc-GCUGCCUUGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 51468 | 0.67 | 0.59068 |
Target: 5'- aCAUCCUCG-UCGCGgcCGGagcCGGGGCAGUc -3' miRNA: 3'- -GUGGGAGCuGGCGC--GCU---GCCUUGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 44873 | 0.67 | 0.59068 |
Target: 5'- cCACCUUggcaCGGCuCcCGCGAcCGGGACAGUc -3' miRNA: 3'- -GUGGGA----GCUG-GcGCGCU-GCCUUGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 8354 | 0.67 | 0.59068 |
Target: 5'- gGCCagauCUgGAUCGCgGCGGCGGAcgcGCAGg -3' miRNA: 3'- gUGG----GAgCUGGCG-CGCUGCCU---UGUCg -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 33657 | 0.67 | 0.568676 |
Target: 5'- --aCCUCGACCaguggacccagguGCGCGACacccacgaGGGcCAGCa -3' miRNA: 3'- gugGGAGCUGG-------------CGCGCUG--------CCUuGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 22052 | 0.67 | 0.581228 |
Target: 5'- aCGCCacgucagcagggagCGGCUGCGCGGCGGccugGGCa -3' miRNA: 3'- -GUGGga------------GCUGGCGCGCUGCCuug-UCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 46961 | 0.67 | 0.559307 |
Target: 5'- aCACUCcgcCGACCGC-CGACGaGugGGCg -3' miRNA: 3'- -GUGGGa--GCUGGCGcGCUGCcUugUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 20698 | 0.67 | 0.548948 |
Target: 5'- aACCagggacaGGCCGCGCGACaGAugGGg -3' miRNA: 3'- gUGGgag----CUGGCGCGCUGcCUugUCg -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 25068 | 0.67 | 0.58018 |
Target: 5'- aCACUC-CGGCCGUcaggGCGAUGcGGuCAGCg -3' miRNA: 3'- -GUGGGaGCUGGCG----CGCUGC-CUuGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 49550 | 0.67 | 0.573899 |
Target: 5'- gGCCCgauaugccgacgugcUCGACCGUgucaaggucgucGCucaugaGAUGGAACAGCu -3' miRNA: 3'- gUGGG---------------AGCUGGCG------------CG------CUGCCUUGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 13969 | 0.67 | 0.56972 |
Target: 5'- gCAUCCUCGGCga-GCGGCuGuAGCAGCg -3' miRNA: 3'- -GUGGGAGCUGgcgCGCUGcC-UUGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 55987 | 0.67 | 0.548948 |
Target: 5'- aCGCCCUCGGCCagGUGCu-UGGc-CAGCg -3' miRNA: 3'- -GUGGGAGCUGG--CGCGcuGCCuuGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 5828 | 0.67 | 0.538649 |
Target: 5'- cCGCCC-CGACCGU--GAUGGAGCucacauGCa -3' miRNA: 3'- -GUGGGaGCUGGCGcgCUGCCUUGu-----CG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 4424 | 0.66 | 0.643503 |
Target: 5'- uGCCCUgGgcaaguuuGCCGUGCGcuuugACGGGuccauCAGCg -3' miRNA: 3'- gUGGGAgC--------UGGCGCGC-----UGCCUu----GUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 21655 | 0.66 | 0.632923 |
Target: 5'- --aCgUgGGCCGCGCG-CGGGucCAGCu -3' miRNA: 3'- gugGgAgCUGGCGCGCuGCCUu-GUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 30731 | 0.66 | 0.654074 |
Target: 5'- uGCCCUCGAgCCaCGCGgccagcuugGCGGggUugucGGCc -3' miRNA: 3'- gUGGGAGCU-GGcGCGC---------UGCCuuG----UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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