Results 61 - 74 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
31750 | 3' | -58.1 | NC_006938.1 | + | 24372 | 0.66 | 0.611769 |
Target: 5'- gCACCCUC-AgCGCGUGuccauccUGGAGCAGg -3' miRNA: 3'- -GUGGGAGcUgGCGCGCu------GCCUUGUCg -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 29248 | 0.66 | 0.622342 |
Target: 5'- aACCUgcacgaggcaaUCGGCCGCGCcguuuGCGGc-CAGCg -3' miRNA: 3'- gUGGG-----------AGCUGGCGCGc----UGCCuuGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 37290 | 0.66 | 0.622342 |
Target: 5'- aCACCCUgGAagGUGuCGACGaGAGCAucGCa -3' miRNA: 3'- -GUGGGAgCUggCGC-GCUGC-CUUGU--CG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 53100 | 0.66 | 0.622342 |
Target: 5'- aCGCCCUUGACauCaCGGCGGaGugGGCg -3' miRNA: 3'- -GUGGGAGCUGgcGcGCUGCC-UugUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 10533 | 0.66 | 0.626574 |
Target: 5'- uCACCCUCacggacgaguacauGCCGCuGCuGACGGAcgguccCAGCa -3' miRNA: 3'- -GUGGGAGc-------------UGGCG-CG-CUGCCUu-----GUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 11256 | 0.66 | 0.632923 |
Target: 5'- cCGCCCU-GGCCGC-CGAUGaGGAUcgAGCc -3' miRNA: 3'- -GUGGGAgCUGGCGcGCUGC-CUUG--UCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 21655 | 0.66 | 0.632923 |
Target: 5'- --aCgUgGGCCGCGCG-CGGGucCAGCu -3' miRNA: 3'- gugGgAgCUGGCGCGCuGCCUu-GUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 26814 | 0.66 | 0.632923 |
Target: 5'- gCACUCUCGugGCCGUcaaGGCGGucaugAACGGCa -3' miRNA: 3'- -GUGGGAGC--UGGCGcg-CUGCC-----UUGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 42728 | 0.66 | 0.632923 |
Target: 5'- cCACCucgcgcuguguCUUGcCCGCGCGGCGG--CGGUa -3' miRNA: 3'- -GUGG-----------GAGCuGGCGCGCUGCCuuGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 4424 | 0.66 | 0.643503 |
Target: 5'- uGCCCUgGgcaaguuuGCCGUGCGcuuugACGGGuccauCAGCg -3' miRNA: 3'- gUGGGAgC--------UGGCGCGC-----UGCCUu----GUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 49610 | 0.66 | 0.643503 |
Target: 5'- uGCUgagCUCGGCCcCGCu-CGGAACGGUg -3' miRNA: 3'- gUGG---GAGCUGGcGCGcuGCCUUGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 35177 | 0.66 | 0.643503 |
Target: 5'- uGCCgggUUGACCGUguaggGCGGCcggaGGGACAGCu -3' miRNA: 3'- gUGGg--AGCUGGCG-----CGCUG----CCUUGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 17811 | 0.66 | 0.654074 |
Target: 5'- gACCCUcaugaucgaggCGGCC-CGCGccuauggcauGCGGAaggACAGCg -3' miRNA: 3'- gUGGGA-----------GCUGGcGCGC----------UGCCU---UGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 30731 | 0.66 | 0.654074 |
Target: 5'- uGCCCUCGAgCCaCGCGgccagcuugGCGGggUugucGGCc -3' miRNA: 3'- gUGGGAGCU-GGcGCGC---------UGCCuuG----UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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