miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31750 3' -58.1 NC_006938.1 + 24372 0.66 0.611769
Target:  5'- gCACCCUC-AgCGCGUGuccauccUGGAGCAGg -3'
miRNA:   3'- -GUGGGAGcUgGCGCGCu------GCCUUGUCg -5'
31750 3' -58.1 NC_006938.1 + 23667 0.66 0.599104
Target:  5'- --aCCUCGugCcgaagcaGCGCGACGucggccaGGGCGGCa -3'
miRNA:   3'- gugGGAGCugG-------CGCGCUGC-------CUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 23434 0.68 0.508177
Target:  5'- --aCCUCGGCCGCGacaccCGGCuGAcCGGCg -3'
miRNA:   3'- gugGGAGCUGGCGC-----GCUGcCUuGUCG- -5'
31750 3' -58.1 NC_006938.1 + 22849 0.73 0.265188
Target:  5'- --aCCUUGuagaugaaguCCGCGCGGCGGGcCAGCg -3'
miRNA:   3'- gugGGAGCu---------GGCGCGCUGCCUuGUCG- -5'
31750 3' -58.1 NC_006938.1 + 22500 0.66 0.605433
Target:  5'- gACCCggccacggaggaggCGAgUGCGCucccgaGACGcGAACAGCg -3'
miRNA:   3'- gUGGGa-------------GCUgGCGCG------CUGC-CUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 22411 0.68 0.508177
Target:  5'- ---aCUCGGucCCGCGCGGCgaaGGAGcCAGCg -3'
miRNA:   3'- guggGAGCU--GGCGCGCUG---CCUU-GUCG- -5'
31750 3' -58.1 NC_006938.1 + 22368 0.71 0.344812
Target:  5'- aCACCaucggaUgGGCCGCGCGACuGGuGCAGa -3'
miRNA:   3'- -GUGGg-----AgCUGGCGCGCUG-CCuUGUCg -5'
31750 3' -58.1 NC_006938.1 + 22052 0.67 0.581228
Target:  5'- aCGCCacgucagcagggagCGGCUGCGCGGCGGccugGGCa -3'
miRNA:   3'- -GUGGga------------GCUGGCGCGCUGCCuug-UCG- -5'
31750 3' -58.1 NC_006938.1 + 21655 0.66 0.632923
Target:  5'- --aCgUgGGCCGCGCG-CGGGucCAGCu -3'
miRNA:   3'- gugGgAgCUGGCGCGCuGCCUu-GUCG- -5'
31750 3' -58.1 NC_006938.1 + 20698 0.67 0.548948
Target:  5'- aACCagggacaGGCCGCGCGACaGAugGGg -3'
miRNA:   3'- gUGGgag----CUGGCGCGCUGcCUugUCg -5'
31750 3' -58.1 NC_006938.1 + 18184 0.71 0.369311
Target:  5'- aCGCCCU---CCGCGCGGCcGGAcacCAGCu -3'
miRNA:   3'- -GUGGGAgcuGGCGCGCUG-CCUu--GUCG- -5'
31750 3' -58.1 NC_006938.1 + 17811 0.66 0.654074
Target:  5'- gACCCUcaugaucgaggCGGCC-CGCGccuauggcauGCGGAaggACAGCg -3'
miRNA:   3'- gUGGGA-----------GCUGGcGCGC----------UGCCU---UGUCG- -5'
31750 3' -58.1 NC_006938.1 + 15469 0.68 0.488272
Target:  5'- uGgCCUCGACCaggaGCGggcUGACGcGGGCGGCa -3'
miRNA:   3'- gUgGGAGCUGG----CGC---GCUGC-CUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 14070 0.68 0.487287
Target:  5'- -uUCCUUGAUCGCGaaGACGGugucgucGACGGCg -3'
miRNA:   3'- guGGGAGCUGGCGCg-CUGCC-------UUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 13969 0.67 0.56972
Target:  5'- gCAUCCUCGGCga-GCGGCuGuAGCAGCg -3'
miRNA:   3'- -GUGGGAGCUGgcgCGCUGcC-UUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 13641 0.69 0.478458
Target:  5'- -gUCaCUCGGCCGCGCuGACaugcucauGGAgcGCGGCa -3'
miRNA:   3'- guGG-GAGCUGGCGCG-CUG--------CCU--UGUCG- -5'
31750 3' -58.1 NC_006938.1 + 13460 0.72 0.306628
Target:  5'- aCACCCUCGGCgGCGaCGAUc--GCGGCc -3'
miRNA:   3'- -GUGGGAGCUGgCGC-GCUGccuUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 12654 0.74 0.228404
Target:  5'- gGCCCUCGGCCGCcuCG-CGGAA-GGCg -3'
miRNA:   3'- gUGGGAGCUGGCGc-GCuGCCUUgUCG- -5'
31750 3' -58.1 NC_006938.1 + 12179 0.73 0.25242
Target:  5'- aCGCUCUCGaACUGCuggaGCGGCGGGaagaccgccuGCAGCg -3'
miRNA:   3'- -GUGGGAGC-UGGCG----CGCUGCCU----------UGUCG- -5'
31750 3' -58.1 NC_006938.1 + 12004 0.69 0.468742
Target:  5'- aACCCg-GACCGCGCccucGAUGGcGGCGGUu -3'
miRNA:   3'- gUGGGagCUGGCGCG----CUGCC-UUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.